Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_L19
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    29   2.9  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    29   2.9  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    29   2.9  
AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek (dictyo...    28   6.6  
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos...    28   6.6  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   8.8  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   8.8  

>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = -2

Query: 713 ASSHPSPXISGTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SA 537
           +S +P+P I     R   PR     TP L  + I+P+     +F P + PP    +P  A
Sbjct: 510 SSCYPTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQA 566

Query: 536 YLTPSSLGMXKGVSPPYFQVNDESQASRLISR 441
              P++L      S P   V ++      ++R
Sbjct: 567 LFNPTNLYPTPPSSLPNTYVPNQESFDESVNR 598


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = -2

Query: 713 ASSHPSPXISGTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SA 537
           +S +P+P I     R   PR     TP L  + I+P+     +F P + PP    +P  A
Sbjct: 510 SSCYPTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQA 566

Query: 536 YLTPSSLGMXKGVSPPYFQVNDESQASRLISR 441
              P++L      S P   V ++      ++R
Sbjct: 567 LFNPTNLYPTPPSSLPNTYVPNQESFDESVNR 598


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -2

Query: 701 PSPXISGTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 522
           P+P  + T+T  +NP   TPTT   TS   N ++P+       +     + AP    +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548

Query: 521 SLGMXKGVSPP 489
           +       S P
Sbjct: 549 TTPTHTTASQP 559


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = -2

Query: 719  PYASSHP-SPXISGTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSS 552
            P A   P SP  S TS + S     ++PT+P    TS S +P +P     +P   P   S
Sbjct: 1601 PAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPS 1660

Query: 551  EAPSAYLTPSSLGMXKGVSPPY 486
             +PS+     S       SP Y
Sbjct: 1661 YSPSSPSYSPSSPRYSPTSPTY 1682


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -2

Query: 701 PSPXISGTSTRSSNPRFHTPTTPDLTSISINPLTP--Y*KEFAPGLKPPLSSEAPSAYLT 528
           P+P  + T+T  +NP   TPTT  + +I  +P  P          + P  S+ AP+A + 
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVN 547

Query: 527 PSS 519
           P+S
Sbjct: 548 PTS 550


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = -2

Query: 719  PYASSHP-SPXISGTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSS 552
            P A   P SP  S TS + S     ++PT+P    TS S +P +P     +P   P   S
Sbjct: 1608 PAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPS 1667

Query: 551  EAPSAYLTPSSLGMXKGVSPPY 486
             +PS+     S       SP Y
Sbjct: 1668 YSPSSPSYSPSSPRYSPTSPTY 1689


>AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek
           (dictyostelium suppressorof mek null) homolog protein 1,
           isoform b protein.
          Length = 849

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 27/94 (28%), Positives = 36/94 (38%)
 Frame = -2

Query: 719 PYASSHPSPXISGTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPS 540
           P ASS P P      T S N +  +P TP + S+     +    +  P      SS   S
Sbjct: 705 PRASSSPGPSRDDEVTSSQNNKESSP-TPTVKSLVDYDESDDSDDDPPSPDAVPSSSTGS 763

Query: 539 AYLTPSSLGMXKGVSPPYFQVNDESQASRLISRH 438
                 S    KG SP Y  V+  S   +  SR+
Sbjct: 764 PEKEGDSADGKKGDSPEYNDVSSTSNEEKFDSRN 797


>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
            (dictyostelium suppressorof mek null) homolog protein 1,
            isoform a protein.
          Length = 1085

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 27/94 (28%), Positives = 36/94 (38%)
 Frame = -2

Query: 719  PYASSHPSPXISGTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPS 540
            P ASS P P      T S N +  +P TP + S+     +    +  P      SS   S
Sbjct: 941  PRASSSPGPSRDDEVTSSQNNKESSP-TPTVKSLVDYDESDDSDDDPPSPDAVPSSSTGS 999

Query: 539  AYLTPSSLGMXKGVSPPYFQVNDESQASRLISRH 438
                  S    KG SP Y  V+  S   +  SR+
Sbjct: 1000 PEKEGDSADGKKGDSPEYNDVSSTSNEEKFDSRN 1033


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 563  PLSSEAPSAYLTPSSLGMXKGVSPP 489
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 563  PLSSEAPSAYLTPSSLGMXKGVSPP 489
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,328,161
Number of Sequences: 27780
Number of extensions: 367666
Number of successful extensions: 1166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)