Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_L15
         (1011 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   3.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 539 PPPPXXKKKTXPPPPXKXXXGXKKKKK 459
           PPPP  +  + PPPP       K+K K
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 379 PPPXPXGXFPPPPGGXXXPPP 317
           PPP P   F PP      PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 321 GGXXXPPGGGGNXPXGXGGGKXXF 392
           GG    PGG G  P G GGG   F
Sbjct: 231 GGFEGGPGGFGGGPGGFGGGLGGF 254


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.4 bits (48), Expect(2) = 3.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 697 PPPPPPXXXXXXGGG 741
           PPPPPP       GG
Sbjct: 946 PPPPPPPPLVSAAGG 960



 Score = 22.2 bits (45), Expect(2) = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 691 AXPPPPPP 714
           A PPPPPP
Sbjct: 943 AFPPPPPP 950


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
 Frame = -3

Query: 379 PPPXPX----GXFPPPPGGXXXPPP 317
           PPP P     G  P PP G   PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPP 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,566
Number of Sequences: 5004
Number of extensions: 22693
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 525259918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)