Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_L12
         (973 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    31   0.19 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   3.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   7.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.0  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = -3

Query: 815  PPPPPXXKKKKXXXXXXPPPXXKKKKXXXXXGGGXPXXPPPPPP 684
            PPPPP    K        P             G  P  PPPPPP
Sbjct: 907  PPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPP 950



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/46 (32%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
 Frame = -3

Query: 815  PPPPPXXKKKKXXXXXXPPPXXKKKKXXXXXG--GGXPXXPPPPPP 684
            PPPPP   K        P             G     P  PPPPPP
Sbjct: 908  PPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPPP 953


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = -3

Query: 788 KKXXXXXXPPPXXKKKKXXXXXGGGXPXXPPPPPP 684
           KK      PP    + K     G      PPPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = -3

Query: 764 PPPXXKKKKXXXXXGGGXPXX---PPPPPP 684
           PPP  ++ +     G G       PPPPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = -2

Query: 810 PPPXXXKKKKXXXXXPPPPXKKKKXXXXXGGGGXXXPPPPP 688
           PP             PPPP             G   PPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 719 GGXPXXPPPPPP 684
           GG P  PPPPPP
Sbjct: 303 GGLPPPPPPPPP 314


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 816 PPPPPXXXKKKKXXXXXPPPPXKKKK 739
           PPPPP    +       PPPP   KK
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 816 PPPPPXXXKKKKXXXXXPPPPXKKKK 739
           PPPPP   +        PPP   KK+
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 23.0 bits (47), Expect(2) = 3.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 710 PXXPPPPPP 684
           P  PPPPPP
Sbjct: 21  PSQPPPPPP 29



 Score = 22.2 bits (45), Expect(2) = 3.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 716 GXPXXPPPPP 687
           G P  PPPPP
Sbjct: 7   GNPPPPPPPP 16


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/40 (30%), Positives = 13/40 (32%)
 Frame = -2

Query: 816  PPPPPXXXKKKKXXXXXPPPPXKKKKXXXXXGGGGXXXPP 697
            PPPPP             PPP K  +        G   PP
Sbjct: 908  PPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPP 947


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = -2

Query: 816 PPPPPXXXKKKKXXXXXPPPPXKKKKXXXXXGGGGXXXPPPPP 688
           PPPPP            P PP            GG   PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIM-------GGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = -3

Query: 815 PPPPPXXKKKKXXXXXXPPPXXKKKKXXXXXGGGXPXXPPPPPP 684
           P P P            PPP            G  P  PPPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPP----GVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,493,512
Number of Sequences: 5004
Number of extensions: 23812
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)