Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_L07
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   138   1e-33
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   136   3e-33
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    39   0.001
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.2  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  138 bits (333), Expect = 1e-33
 Identities = 64/100 (64%), Positives = 77/100 (77%)
 Frame = -1

Query: 632 FREXRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 453
           +RE R ++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177

Query: 452 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQ 333
           +LLAREVLR+RG L R   WDV+ DL+FYRDPEE E++E+
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEE 217



 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 28/56 (50%), Positives = 32/56 (57%)
 Frame = -3

Query: 798 AVRAXVXIETPXXVFVI*SRPFGQRXVXKFPAHTGXTLIAXRFTPGAFXNQIQAAF 631
           A R    IE P  V V+ +R +G R V KF AHTG T IA RFTPG F N I   +
Sbjct: 63  AARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 118


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  136 bits (329), Expect = 3e-33
 Identities = 64/101 (63%), Positives = 77/101 (76%)
 Frame = -1

Query: 632 FREXRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 453
           +RE R +IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178

Query: 452 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 330
           +LLAREVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 62.1 bits (144), Expect = 9e-11
 Identities = 31/56 (55%), Positives = 33/56 (58%)
 Frame = -3

Query: 798 AVRAXVXIETPXXVFVI*SRPFGQRXVXKFPAHTGXTLIAXRFTPGAFXNQIQAAF 631
           A R    IE P  V VI SRP+G R V KF AHTG T IA RFTPG F N I   +
Sbjct: 64  AARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 119


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = -1

Query: 659 LLXTRSKLHFREXRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 480
           L+ T  K  +     +++L+P ++     EA   ++P I + +TD+  R V   IP N  
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227

Query: 479 SSHSIGLMWWLLAR 438
           S     L+  LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 575 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 465
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 412 FPVTSAGML--WLICSSTVTLKKVKRM 338
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,356
Number of Sequences: 5004
Number of extensions: 56150
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)