Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_L06
         (979 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.11 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   5.9  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +1

Query: 751  PPXXLXAPPPPPXPXXPXXPXLLPSPXXP 837
            PP  +  PPPP  P  P  P   P P  P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +1

Query: 751  PPXXLXAPPPPPXPXXPXXPXLLPSPXXPXLXP 849
            PP      PPPP    P  P   P P  P   P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.0 bits (47), Expect(2) = 5.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 546 PPPPPXPG 523
           PPPPP PG
Sbjct: 10  PPPPPPPG 17



 Score = 21.4 bits (43), Expect(2) = 5.9
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -2

Query: 543 PPPPXPGGXCXFXKKKXXXXGG 478
           PPPP P G     K K     G
Sbjct: 24  PPPPPPPGYVKKRKNKTPAQSG 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,446
Number of Sequences: 5004
Number of extensions: 22700
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)