Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_L04
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr...    29   2.9  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    28   8.7  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    28   8.7  

>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +3

Query: 210 GTEAGRR----VRQAARPRLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPP 350
           GTE+G R     RQA    + H PP + PP+     A  P P +  VA PP
Sbjct: 255 GTESGARHGSISRQATLTFVSHKPPPVNPPQP----AVPPKPAKISVADPP 301


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/57 (24%), Positives = 31/57 (54%)
 Frame = +3

Query: 96  EKVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQHG 266
           ++ P+ ++   ++LR+P  + +  ++ P+  ++ +RLD TE         R  L+HG
Sbjct: 32  QQTPSSSSSKRKNLRKPSTDDTPSSSEPL--SKKNRLDSTETAEEDNTRRRRTLKHG 86


>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
            F52G2.2a protein.
          Length = 1319

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 234  RQAARPRLQHGPPR-LEPPRSNYSFAGAPFPP 326
            +Q+ +PR    P   L PP S  SF GAP PP
Sbjct: 1221 QQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPP 1252


>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
            F52G2.2b protein.
          Length = 1129

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 234  RQAARPRLQHGPPR-LEPPRSNYSFAGAPFPP 326
            +Q+ +PR    P   L PP S  SF GAP PP
Sbjct: 1031 QQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPP 1062


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 234 RQAARPRLQ--HGPPRLEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRL 377
           ++ +RP L+   G  R   PR+N + AGAP       AS P I   R  L
Sbjct: 13  QKPSRPFLRKGQGTARFRMPRNNKTSAGAPPTSELSSASSPSINVPRFSL 62


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 234 RQAARPRLQ--HGPPRLEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRL 377
           ++ +RP L+   G  R   PR+N + AGAP       AS P I   R  L
Sbjct: 13  QKPSRPFLRKGQGTARFRMPRNNKTSAGAPPTSELSSASSPSINVPRFSL 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,669,923
Number of Sequences: 27780
Number of extensions: 210899
Number of successful extensions: 819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)