Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_L04
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +1

Query: 541 PSTXPPPXXX-GAPPDRDP 594
           PS  PPP    GAPP ++P
Sbjct: 42  PSQGPPPGGPPGAPPSQNP 60


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +3

Query: 99   KVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQ 260
            +VPA+ T  G H+ +P   ++ +A + V +   +   G   G ++R  +   +Q
Sbjct: 1311 RVPARITSFGGHVVRPWRGSATLACNAVGDPTREWYKG--QGEQIRTDSTRNIQ 1362


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +3

Query: 99   KVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQ 260
            +VPA+ T  G H+ +P   ++ +A + V +   +   G   G ++R  +   +Q
Sbjct: 1307 RVPARITSFGGHVVRPWRGSATLACNAVGDPTREWYKG--QGEQIRTDSTRNIQ 1358


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 65  CHHCADRXRGRHSG 24
           C  C DR  G+H G
Sbjct: 110 CSICGDRASGKHYG 123


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 65  CHHCADRXRGRHSG 24
           C  C DR  G+H G
Sbjct: 110 CSICGDRASGKHYG 123


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = -1

Query: 176 VGRDRGRLTFRLTQMLTGHGCFGRYLFKIAGREPTAQCHHCADRXRGRH 30
           +GRD       L    +  GC  R       R+    C  C DR  G H
Sbjct: 150 IGRDELSQPGSLNGYGSSDGCDARKKKGPTPRQQEELCLVCGDRASGYH 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,155
Number of Sequences: 438
Number of extensions: 2977
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)