Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_L01
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.4  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   4.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.5  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    25   9.5  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.5  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   9.5  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +2

Query: 386  PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRXPNTXASP-DTNA 562
            P T+ T +   PP+          P  ++    TST  T  T +    P T ++  +T+ 
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702

Query: 563  P 565
            P
Sbjct: 1703 P 1703


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 653 KQANKKASKFPWXRKIDTSEFVVTCKIRRPVRS 555
           K  N+ + +FP+  KI       TCK  +P RS
Sbjct: 139 KNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +1

Query: 259 SRRSARFSRTGWAATAEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTS-LTR 435
           S+ S+ FS T  ++++  S   T + S    P      +++L+SH ++ +   S++ ++ 
Sbjct: 362 SKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSS 421

Query: 436 CYSHTEEANREHLSGTHKHALHRKNLHP 519
            + H   ++R   S +  H+L   +  P
Sbjct: 422 AFYHNSTSSRSS-SHSSSHSLSSLSSKP 448


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 354  TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLPH*GSQPRTLVRHAQART 497
            TM  + ++K     RKL+    HL +  L+ H   QP    +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 341 KTFYHHANFLPQQIL 385
           +TF HHAN  P++IL
Sbjct: 13  RTFAHHANLTPRKIL 27


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +2

Query: 356 HANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPT--ANT 472
           H N     + P T   T   VPP  H  T T+  PT  ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 425 LLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRXP--NTXASPDTNAPDVLSY 580
           L HD  P +R+P A  C A+     T +  I +  P  N+ ++ D ++  +LS+
Sbjct: 174 LCHDEAPMVRRPAATNC-AKFVFLVTKQEAIDEFIPLFNSLSNDDQDSVRLLSF 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,378
Number of Sequences: 5004
Number of extensions: 63832
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)