Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_K23
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    27   2.6  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    27   3.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   8.0  

>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -1

Query: 382 VIHSRSCGQNGKQ-STSPKTRHLGSS*STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLR 206
           ++ + S  ++G + +T+P  R +  + STN      K  S      SL   G+   +   
Sbjct: 221 MVTANSPSEHGIELTTNPLIRKVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFE 280

Query: 205 HSPLSFSPDLLSGSRFRSGGRFC 137
            + L  + D L   +FR  G+ C
Sbjct: 281 DADLEKAADALMACKFRGSGQTC 303


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 259 SSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLL 119
           SS+ +L T+ +TS+    H   +     L+G+     GRFC A  L+
Sbjct: 134 SSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 330 KHVISDPPDPLTVLLGTSSTGH 265
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,737
Number of Sequences: 5004
Number of extensions: 29075
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)