Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_K21
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    26   0.34 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.7  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 366 LVCRVQRCRRAPPPPLR--SLISNLSNTCDLTPLPEWSCEQSAW*GACGRVL 217
           L   V R R   P  L   SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 79  LFVTVPRWRNGIPATLTYISLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 393 PXACXAPTALVCRVQRCRRAPPPPLR 316
           P  C   T   C  +  ++ PP P+R
Sbjct: 432 PNPCTHTTTNGCTAELRKKEPPHPIR 457


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 393 PXACXAPTALVCRVQRCRRAPPPPLR 316
           P  C   T   C  +  ++ PP P+R
Sbjct: 418 PNPCTHTTTNGCTAELRKKEPPHPIR 443


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 393 PXACXAPTALVCRVQRCRRAPPPPLR 316
           P  C   T   C  +  ++ PP P+R
Sbjct: 452 PNPCTHTTTNGCTAELRKKEPPHPIR 477


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 393 PXACXAPTALVCRVQRCRRAPPPPLR 316
           P  C   T   C  +  ++ PP P+R
Sbjct: 401 PNPCTHTTTNGCTAELRKKEPPHPIR 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,760
Number of Sequences: 438
Number of extensions: 1108
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)