Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_K19
         (811 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY640491-1|AAT65100.1|  110|Homo sapiens immunoglobulin E variab...    33   1.2  
AY640490-1|AAT65099.1|  109|Homo sapiens immunoglobulin E variab...    33   1.2  
X16163-1|CAA34288.1|  218|Homo sapiens SmB /B' autoimmune antige...    31   6.5  
X15892-1|CAA33901.1|  240|Homo sapiens protein ( Human hcerN3 ge...    31   6.5  
U41303-1|AAA98969.1|  240|Homo sapiens small nuclear ribonuleopr...    31   6.5  
J04615-1|AAA36617.1|  240|Homo sapiens protein ( Human lupus aut...    31   6.5  
CR450350-1|CAG29346.1|  240|Homo sapiens SNRPN protein.                31   6.5  
BC025178-1|AAH25178.1|  240|Homo sapiens small nuclear ribonucle...    31   6.5  
BC024777-1|AAH24777.1|  240|Homo sapiens SNURF protein protein.        31   6.5  
BC003180-1|AAH03180.1|  240|Homo sapiens small nuclear ribonucle...    31   6.5  
BC000611-1|AAH00611.1|  240|Homo sapiens SNRPN protein protein.        31   6.5  
AK222633-1|BAD96353.1|  240|Homo sapiens small nuclear ribonucle...    31   6.5  
AF400432-1|AAK92481.1|  240|Homo sapiens small nuclear ribonucle...    31   6.5  
AF134832-1|AAD54487.1|   47|Homo sapiens small nuclear ribonucle...    31   6.5  
X17568-1|CAB57868.1|  240|Homo sapiens snRNP B' protein protein.       30   8.6  
M34082-1|AAA36579.1|  233|Homo sapiens protein ( Human small nuc...    30   8.6  
CR456969-1|CAG33250.1|  240|Homo sapiens SNRPB protein.                30   8.6  
AL049650-8|CAB46715.1|  240|Homo sapiens small nuclear ribonucle...    30   8.6  
AF134825-1|AAD54489.1|  243|Homo sapiens small nuclear ribonucle...    30   8.6  

>AY640491-1|AAT65100.1|  110|Homo sapiens immunoglobulin E variable
           region protein.
          Length = 110

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 737 PPSPGIXGXXNPGXSNPRFQNPTTPRXXIHFHQSPXXVXEGVGPGVKASVVIRGS 573
           P  PG+ G   PG S+ R++ P+  R   H H+S   + +G   G   + +  G+
Sbjct: 37  PERPGVDGYIFPGDSDTRYRRPSKARAPSH-HKSSTPLPDGQPEGSDTAYITVGA 90


>AY640490-1|AAT65099.1|  109|Homo sapiens immunoglobulin E variable
           region protein.
          Length = 109

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 737 PPSPGIXGXXNPGXSNPRFQNPTTPRXXIHFHQSPXXVXEGVGPGVKASVVIRGS 573
           P  PG+ G   PG S+ R++ P+  R   H H+S   + +G   G   + +  G+
Sbjct: 36  PERPGVDGYIFPGDSDTRYRRPSKARAPSH-HKSSTPLPDGQPEGSDTAYITVGA 89


>X16163-1|CAA34288.1|  218|Homo sapiens SmB /B' autoimmune antigene 
           protein.
          Length = 218

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 761 GVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G+ P G  PP PGI G   PG   PR
Sbjct: 192 GMPPPGMRPPPPGIRGPPPPGMRPPR 217


>X15892-1|CAA33901.1|  240|Homo sapiens protein ( Human hcerN3 gene
           mRNA for N snRNP associated protein. ).
          Length = 240

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 761 GVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G+ P G  PP PGI G   PG   PR
Sbjct: 214 GMPPPGMRPPPPGIRGPPPPGMRPPR 239


>U41303-1|AAA98969.1|  240|Homo sapiens small nuclear
           ribonuleoprotein particle N protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 761 GVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G+ P G  PP PGI G   PG   PR
Sbjct: 214 GMPPPGMRPPPPGIRGPPPPGMRPPR 239


>J04615-1|AAA36617.1|  240|Homo sapiens protein ( Human lupus
           autoantigen (small nuclear ribonuclepoprotein, snRNP,
           SM-D) mRNA, complete cds. ).
          Length = 240

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 761 GVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G+ P G  PP PGI G   PG   PR
Sbjct: 214 GMPPPGMRPPPPGIRGPPPPGMRPPR 239


>CR450350-1|CAG29346.1|  240|Homo sapiens SNRPN protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 761 GVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G+ P G  PP PGI G   PG   PR
Sbjct: 214 GMPPPGMRPPPPGIRGPPPPGMRPPR 239


>BC025178-1|AAH25178.1|  240|Homo sapiens small nuclear
           ribonucleoprotein polypeptide N protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 761 GVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G+ P G  PP PGI G   PG   PR
Sbjct: 214 GMPPPGMRPPPPGIRGPPPPGMRPPR 239


>BC024777-1|AAH24777.1|  240|Homo sapiens SNURF protein protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 761 GVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G+ P G  PP PGI G   PG   PR
Sbjct: 214 GMPPPGMRPPPPGIRGPPPPGMRPPR 239


>BC003180-1|AAH03180.1|  240|Homo sapiens small nuclear
           ribonucleoprotein polypeptide N protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 761 GVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G+ P G  PP PGI G   PG   PR
Sbjct: 214 GMPPPGMRPPPPGIRGPPPPGMRPPR 239


>BC000611-1|AAH00611.1|  240|Homo sapiens SNRPN protein protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 761 GVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G+ P G  PP PGI G   PG   PR
Sbjct: 214 GMPPPGMRPPPPGIRGPPPPGMRPPR 239


>AK222633-1|BAD96353.1|  240|Homo sapiens small nuclear
           ribonucleoprotein polypeptide N variant protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 761 GVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G+ P G  PP PGI G   PG   PR
Sbjct: 214 GMPPPGMRPPPPGIRGPPPPGMRPPR 239


>AF400432-1|AAK92481.1|  240|Homo sapiens small nuclear
           ribonucleoprotein polypeptide N protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 761 GVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G+ P G  PP PGI G   PG   PR
Sbjct: 214 GMPPPGMRPPPPGIRGPPPPGMRPPR 239


>AF134832-1|AAD54487.1|   47|Homo sapiens small nuclear
           ribonucleoprotein N protein.
          Length = 47

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 761 GVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G+ P G  PP PGI G   PG   PR
Sbjct: 21  GMPPPGMRPPPPGIRGPPPPGMRPPR 46


>X17568-1|CAB57868.1|  240|Homo sapiens snRNP B' protein protein.
          Length = 240

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 800 GXGTPLXXXX*XXGVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G GTP+       G+ P G  PP PG+ G   PG   PR
Sbjct: 208 GRGTPM-------GMPPPGMRPPPPGMRGPPPPGMRPPR 239


>M34082-1|AAA36579.1|  233|Homo sapiens protein ( Human small
           nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
          Length = 233

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 800 GXGTPLXXXX*XXGVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G GTP+       G+ P G  PP PG+ G   PG   PR
Sbjct: 201 GRGTPM-------GMPPPGMRPPPPGMRGPPPPGMRPPR 232


>CR456969-1|CAG33250.1|  240|Homo sapiens SNRPB protein.
          Length = 240

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 800 GXGTPLXXXX*XXGVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G GTP+       G+ P G  PP PG+ G   PG   PR
Sbjct: 208 GRGTPM-------GMPPPGMRPPPPGMRGPPPPGMRPPR 239


>AL049650-8|CAB46715.1|  240|Homo sapiens small nuclear
           ribonucleoprotein polypeptides B and B1 protein.
          Length = 240

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 800 GXGTPLXXXX*XXGVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G GTP+       G+ P G  PP PG+ G   PG   PR
Sbjct: 208 GRGTPM-------GMPPPGMRPPPPGMRGPPPPGMRPPR 239


>AF134825-1|AAD54489.1|  243|Homo sapiens small nuclear
           ribonucleoprotein B' protein.
          Length = 243

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 800 GXGTPLXXXX*XXGVXPLGXXPPSPGIXGXXNPGXSNPR 684
           G GTP+       G+ P G  PP PG+ G   PG   PR
Sbjct: 211 GRGTPM-------GMPPPGMRPPPPGMRGPPPPGMRPPR 242


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,138,848
Number of Sequences: 237096
Number of extensions: 1690063
Number of successful extensions: 2955
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2955
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)