Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_K18
         (1091 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.068
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    30   0.49 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.86 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.86 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   1.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    23   1.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   1.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   6.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   6.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 577 PPPPPXXXXKXPPPPP 530
           PPPPP      PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPP 779



 Score = 29.5 bits (63), Expect = 0.86
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 577 PPPPPXXXXKXPPPPPXXXXGXG 509
           PPP P      PPPPP    G G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG 774



 Score = 29.5 bits (63), Expect(2) = 0.068
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -2

Query: 748 PPPPPPPPP 722
           PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 769 GGGGXXXPPPPPPPP 725
           G  G   PPPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 748 PPPPPPPP 725
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect(2) = 0.91
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 745 PPPPPPPP 722
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 575 PPPPXXXXXXTPPPPP 528
           PPPP       PPPPP
Sbjct: 765 PPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 575 PPPPXXXXXXTPPPPP 528
           PPPP       PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 772 GGGGGXXXPPPPPPP 728
           G  G    PPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783



 Score = 22.2 bits (45), Expect(2) = 0.068
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 760 GXXXPPPPPP 731
           G   PPPPPP
Sbjct: 759 GGPPPPPPPP 768



 Score = 21.0 bits (42), Expect(2) = 0.91
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 748 PPPPPP 731
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 772 GGGGGXXXPPPPPPPPP 722
           G       PPPPPPPPP
Sbjct: 298 GDSANGGLPPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -2

Query: 748 PPPPPPPPP 722
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 748 PPPPPPPPP 722
           P PPPPPPP
Sbjct: 236 PAPPPPPPP 244


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -2

Query: 748 PPPPPPPPP 722
           PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 23.4 bits (48), Expect(2) = 2.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 748 PPPPPPPP 725
           P PPPPPP
Sbjct: 905 PTPPPPPP 912



 Score = 22.6 bits (46), Expect(2) = 2.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 745 PPPPPPPP 722
           PPPPPP P
Sbjct: 907 PPPPPPLP 914


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect(2) = 1.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 772 GGGGGXXXPPPPPPPP 725
           G G      PPPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343



 Score = 21.0 bits (42), Expect(2) = 1.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 739 PPPPPP 722
           PPPPPP
Sbjct: 361 PPPPPP 366


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect(2) = 1.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 748 PPPPPPPP 725
           P PPPPPP
Sbjct: 3   PAPPPPPP 10



 Score = 23.4 bits (48), Expect(2) = 1.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 745 PPPPPPPP 722
           PPPPPP P
Sbjct: 5   PPPPPPAP 12


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 748 PPPPPPPP 725
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 745 PPPPPPPP 722
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 577 PPPPPXXXXKXPPPPP 530
           PPPPP       PPPP
Sbjct: 12  PPPPPGFEPPSQPPPP 27



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 576 PPPPPXXXXKXPPPPP 529
           PPPP       PPPPP
Sbjct: 13  PPPPGFEPPSQPPPPP 28



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 575 PPPPXXXXXXTPPPPP 528
           PPPP       PPPPP
Sbjct: 13  PPPPGFEPPSQPPPPP 28



 Score = 24.2 bits (50), Expect(2) = 1.9
 Identities = 9/11 (81%), Positives = 9/11 (81%), Gaps = 2/11 (18%)
 Frame = -2

Query: 748 PP--PPPPPPP 722
           PP  PPPPPPP
Sbjct: 20  PPSQPPPPPPP 30



 Score = 22.2 bits (45), Expect(2) = 1.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 760 GXXXPPPPPP 731
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 723 GGGGGGGGGXXXPPPPP 773
           GG GG GGG   PPP P
Sbjct: 188 GGFGGFGGGSGGPPPGP 204


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 748  PPPPPPPP 725
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 745  PPPPPPPP 722
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 748 PPPPPPPP 725
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 745 PPPPPPPP 722
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,191
Number of Sequences: 5004
Number of extensions: 24922
Number of successful extensions: 280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 575740598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)