Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_K11
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    30   0.35 
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   1.4  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    27   2.5  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   4.3  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   5.7  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.7  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   10.0 
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   10.0 
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   10.0 

>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 255 CYFSTPPFDTVLYDNIRTVLKDNKTALLPASI 160
           CY   P + + L ++I+T+L DN   ++PA++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 100 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 228
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 20/77 (25%), Positives = 27/77 (35%)
 Frame = -2

Query: 709 KPPSPXXXXXXXXXSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKXPLSSEAPSAYLT 530
           +PPS            P    P  P +  +  NP TP+     P      +  A +  L 
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF-SPINPYYAKSWNHTASAPLLP 303

Query: 529 PSSLGMAKGVSPPYLQV 479
           P   G+  G   PYL V
Sbjct: 304 P---GLKNGSDYPYLSV 317


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 178 SSPCIYSSFSPFLRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 44
           S P         L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 9   SKPIQKPRLKEILKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 189 NKTALLPASIQASLPSSEIYRQLVDPRHVSSDSFGVY 79
           N+  LLP  I  S  +SE   Q  D  ++++ + G+Y
Sbjct: 589 NEKELLPEGIPTSHNNSETQAQTADVSNIAASADGIY 625


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 465 KLRALLVVIPRILRSPPPTHPLIEDV 388
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 470 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 384
           + SF PY S F A   P L ++PS+  +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -2

Query: 655 FHTPTTPDLTSISINPLTP-Y*KEFAPGLKXPLSSEAPSAYLTPSSLGMAKGVSPPYLQV 479
           FHTPT P  T +S    +P    +    +  PLS +A S  LT S L   +  SPP   V
Sbjct: 139 FHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTSSPLKDFQS-SPPLSTV 195

Query: 478 NDESQA 461
             +S +
Sbjct: 196 LQKSHS 201


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 115 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 216
           ++Q A+ LG   RS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,510
Number of Sequences: 5004
Number of extensions: 59649
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)