Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_K08
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 220 1e-57
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 217 9e-57
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.3
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.8
06_03_0543 + 21967787-21970261 29 5.8
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 29 5.8
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.6
02_02_0084 + 6637145-6638677 28 7.6
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 220 bits (537), Expect = 1e-57
Identities = 100/165 (60%), Positives = 126/165 (76%)
Frame = -1
Query: 810 EKXVXAXRAVVAIENPXDVFVXSSRPFGQRAVLKFAAHTGATXIAXRFTPGAFTNQIQAA 631
EK A R +VAIENP D+ V S+RP+GQRAVLKFA +TGA IA R TPG FTNQ+Q +
Sbjct: 60 EKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTS 119
Query: 630 FREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 451
F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLF 179
Query: 450 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 316
WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 180 WLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 217 bits (530), Expect = 9e-57
Identities = 98/161 (60%), Positives = 123/161 (76%)
Frame = -1
Query: 810 EKXVXAXRAVVAIENPXDVFVXSSRPFGQRAVLKFAAHTGATXIAXRFTPGAFTNQIQAA 631
EK A R +VAIENP D+ V S+RP+GQRAVLKFA +TGA IA R TPG FTNQ+Q +
Sbjct: 60 EKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTS 119
Query: 630 FREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 451
F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLF 179
Query: 450 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 328
WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 180 WLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 709 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 602
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 370
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -1
Query: 699 HTGATXIAXRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 526
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 525 DSPLR 511
+ P++
Sbjct: 330 EQPMQ 334
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>02_02_0084 + 6637145-6638677
Length = 510
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = -1
Query: 711 KFAAHTGATXIAXRFTPGAF---TNQIQAAFREPRLLIVLDPAQ-DHQPITEASYVNIPV 544
+ A H GAT + PG F ++ A ++LD + D + ++ +P
Sbjct: 63 RVARHGGATVLRVNMPPGPFLAGDPRVVALLDARSFRVLLDDSMVDKADTLDGTF--MPS 120
Query: 543 IALCNTDSPLRFVDIAIPCNTK 478
+AL PL F+D A P + K
Sbjct: 121 LALFGGHRPLAFLDAADPRHAK 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,150,763
Number of Sequences: 37544
Number of extensions: 407785
Number of successful extensions: 1035
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -