Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_K01
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.28
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.86
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 0.99
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 1.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.5
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 3.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 8.1
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 8.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -3
Query: 751 PPPPPPPXXXXXXXXXXKXXPPXXGXXXXXXXXTGPXPPPPPP 623
PPPPPP PP GP PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMG------GPPPPPPPP 768
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 413 PPPPXXPPPXGEGGXPXXPP 354
PPPP PP G P PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +1
Query: 493 PPPPPPXXGXXPXXXXXXKXXXXPPPPP 576
PPP P G P PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/42 (28%), Positives = 12/42 (28%)
Frame = -3
Query: 751 PPPPPPPXXXXXXXXXXKXXPPXXGXXXXXXXXTGPXPPPPP 626
PPPPPPP PP P P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 413 PPPPXXPPPXGEGGXPXXPP 354
PPPP P G G P PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 412 PPPPXXPPPXERXGG 368
PPPP PPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.86
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +3
Query: 492 PXPPPPXXGXXXXXXXXXKXXXXPPPPPP 578
P PPPP + PPPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Frame = +1
Query: 493 PPPPPPXX---GXXPXXXXXXKXXXXPPPPP 576
PPPPPP G P PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = -2
Query: 752 PPPPPPPXXXXXGXXXXKKXXPXXGXXXXXXXXXXTXPPPPPP 624
PPPPPPP G P G + PPPPPP
Sbjct: 311 PPPPPPPSRRNRG-------KPPIG----NGSSNSSLPPPPPP 342
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +1
Query: 493 PPPPPPXXGXXPXXXXXXKXXXXPPPPP 576
PP PPP K PPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPP 317
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Frame = +1
Query: 493 PPPPP---PXXGXXPXXXXXXKXXXXPPPPP 576
PPPPP P G P + PP PP
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = -2
Query: 752 PPPPPPPXXXXXGXXXXKKXXPXXGXXXXXXXXXXTXPPPPPP 624
PPPPPPP G P G + PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSI----PLPPQG---------RSAPPPPPP 366
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.0 bits (52), Expect(2) = 0.99
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 646 PXPPPPPPXXXFF 608
P PPPPPP F+
Sbjct: 307 PPPPPPPPSNDFW 319
Score = 23.8 bits (49), Expect(2) = 2.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 646 PXPPPPPPXXXFFF 605
P PPPPPP F+
Sbjct: 306 PPPPPPPPPSNDFW 319
Score = 22.2 bits (45), Expect(2) = 0.99
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 649 GPXPPPPPP 623
G PPPPPP
Sbjct: 303 GGLPPPPPP 311
Score = 21.8 bits (44), Expect(2) = 2.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 649 GPXPPPPPP 623
G PPPPPP
Sbjct: 304 GLPPPPPPP 312
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.6 bits (51), Expect(2) = 1.2
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -1
Query: 441 PPXXFXKKXPPPPPXXPPP 385
PP PPPP PPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717
Score = 22.2 bits (45), Expect(2) = 1.2
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = -1
Query: 411 PPPPXXPPPXRGXXAXXTP 355
PPPP PP G + P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPP 1733
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 493 PPPPPPXXGXXPXXXXXXKXXXXPPPPP 576
PPPPPP G P PPPPP
Sbjct: 9 PPPPPPPPGFEP------PSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = -2
Query: 410 PPPXXPPPXGE--GGXPXXPPXGXKXKXREK 324
PPP PPP E P PP G K + K
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 355 GGXXGXPPSPXGGGXXGGGG 414
GG G PP P G G GG G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFG 214
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/48 (31%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Frame = -3
Query: 751 PPPPPPPXXXXXXXXXXKXXPPXXGXXXXXXXXTG-----PXPPPPPP 623
P PPPPP P G P PPPPPP
Sbjct: 905 PTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPP 952
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/42 (28%), Positives = 13/42 (30%)
Frame = -3
Query: 751 PPPPPPPXXXXXXXXXXKXXPPXXGXXXXXXXXTGPXPPPPP 626
PPPPPPP + P P PP P
Sbjct: 238 PPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATP 279
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 140 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 42
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,407
Number of Sequences: 5004
Number of extensions: 51686
Number of successful extensions: 593
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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