Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_J23
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    29   1.0  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   4.2  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    27   4.2  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   5.6  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   7.4  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.7  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   9.7  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 436 ERPVDSVSRPVPAGWFWSSGVFRDTSGTVW 347
           +R +D+  +P P  +F   G  RD  G +W
Sbjct: 492 DRYIDTYLKPYPGFYFTGDGATRDKDGYIW 521


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 292 RIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDA 414
           R   +E S  S   PVGPP    W P     T+TSL  + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +2

Query: 269  PSRRSLRGESKALKRRPSQYGSPSGRPDGAAGVPEYPAGPEPACR 403
            P + + R  SK L+      GSPS      A     P  PEPA +
Sbjct: 874  PKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSIKPQKPEPALK 918


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 430 PVDSVSRPVPAGWFWSSGVFRDTSGTV 350
           P+ S+S+ VP GW W    F  T+G +
Sbjct: 293 PIASLSKIVPKGWQWCLSYFA-TAGVI 318


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
 Frame = +2

Query: 167 YTRRPIPSEVRTRMR*GGYR---GQHYNQRARLTPRTPSRRSLRGES-----KALKRRPS 322
           + ++P PS   ++   GG R   G+ +    RL  R+PS    R  S     ++ +R  S
Sbjct: 83  WAKQPPPSGPGSKR--GGRRERGGRVHGDSGRLRSRSPSPHEARSRSPYNDERSDRRSMS 140

Query: 323 -QYGSPSGRPDGAAGVPEY 376
            +Y S S  PDG +  P+Y
Sbjct: 141 PRYRSRSRSPDGRSRSPDY 159


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = +2

Query: 149 TTPLHSYTRRPIPSEVRTRMR*GGYRGQHYNQRARLTPRTPSR--RSLRGESKALKRRPS 322
           T+  HS+   P P   R   R      ++Y    RLTP   S   R  R   ++ +R  S
Sbjct: 38  TSSTHSHPSNPPPPPTRLHDRSFKPVSKNYESEGRLTPPPVSMGYRYARSSKQSFQREDS 97

Query: 323 QY 328
            Y
Sbjct: 98  GY 99


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 284 LRGESKALKRRPSQYGSPSGRPDGAA 361
           L   S +  R+P QY SPSG  + AA
Sbjct: 608 LNPTSGSFLRQPMQYSSPSGVSESAA 633


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 595 PSPSSRGPEAGIRPYVPAPV 536
           P+ + RG E  + PY+P PV
Sbjct: 348 PNEAGRGDERRVIPYMPGPV 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,998
Number of Sequences: 5004
Number of extensions: 55165
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)