Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_J21
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    29   0.76 
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    29   1.0  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.8  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   2.3  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   7.1  

>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 438 PRTDRRTSPPEMRRRFVSNRNGIASRACRTPDPSCASRRVSTCGAWIYPGFSF 596
           P  D    PP+ +++F     G  +    TP     S R  TCG +IY G  F
Sbjct: 13  PDYDPSIRPPKKKKKFQGPNGGKLTVRLMTP----FSMRCHTCGEYIYKGKKF 61


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
 Frame = -1

Query: 633 SSAICTKTWIRVQKRNPDISKLRMS---IRDVTHKMDLAYGMLGSLFRSGSRQTFFSSQV 463
           SS I TK +      + +++K  +S   I+D+   +D  Y  L  +FR+     F ++  
Sbjct: 430 SSRILTKLY---SPNSRNVTKKHISYAVIQDLEQLLDGFYNSLPRVFRAEQPGEFQANHF 486

Query: 462 VRYADLYAASFLNLMYYPFCYMFRAPAMLMPHESTVAHEQRFTLDTPTID 313
                L   SF  L+Y P  +   A +  M        +  FTL    +D
Sbjct: 487 FYNLQLVYYSFRMLIYRPLLHYLEADSPAMQALKVPDRQTAFTLACKCVD 536


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 543 HKMDLAYGMLGSLFRSGSRQTFFSSQVVRYADL-YAASF 430
           H +DL    +G  F S + QTF     VRYA L YA +F
Sbjct: 45  HWLDLGTLSVGHYFLSLALQTFVPKDSVRYAHLPYAQAF 83


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 309 SRHPSAQRSYGVVTVAEDTSEENSIINAQEPIDAKAAGSVPHVRPET 169
           SR P+   +YG    + DT    S + +Q+P+ A      P + P+T
Sbjct: 262 SRRPTLLNTYGNRCSSTDTLSSLSRLTSQDPLKASLPLQSPPLAPKT 308


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 270 TVAEDTSEENSIINAQEPIDAKAAGSVPH 184
           TV +D +E+N I+    P  +KA   +P+
Sbjct: 330 TVVKDVNEKNLIVQKTNPDGSKAMQEIPY 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,701
Number of Sequences: 5004
Number of extensions: 60275
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)