Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_J21
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   5.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.7  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   7.5  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   7.5  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   7.5  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   7.5  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   7.5  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   7.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.9  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.9  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 289 LCAWMSRSVNGRRVEGEPLFVRHRRLVRHQHGGRTE 396
           L  WM+R V+G R++         RL+      RT+
Sbjct: 209 LTFWMNRGVDGFRIDAINHMFEDARLLDEPSANRTD 244


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 525 YGMLGSLFRSGSRQTFFSSQVVRY 454
           Y MLGSLF  GS  T       RY
Sbjct: 128 YAMLGSLFGCGSIWTMTMIAFDRY 151


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 525 YGMLGSLFRSGSRQTFFSSQVVRY 454
           Y MLGSLF  GS  T       RY
Sbjct: 94  YAMLGSLFGCGSIWTMTMIAFDRY 117


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 428 RNEAAYRSAYLTT*DEKKVCLEPERNSEPSM 520
           +NE +YR    T+ +  +  +E ER+ EP +
Sbjct: 284 KNENSYRKYRETSKERSRDRIERERSREPKI 314


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 428 RNEAAYRSAYLTT*DEKKVCLEPERNSEPSM 520
           +NE  YR    T+ +  +  +E ER+ EP +
Sbjct: 273 KNEREYRKYGKTSKERSRDRMERERSKEPKI 303


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 525 YGMLGSLFRSGSRQTFFSSQVVRY 454
           Y MLGSLF  GS  T       RY
Sbjct: 4   YAMLGSLFGCGSIWTMTMIAFDRY 27


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 428 RNEAAYRSAYLTT*DEKKVCLEPERNSEPSM 520
           +NE +YR    T+ +  +   E ER+ EP +
Sbjct: 51  KNENSYRKYRKTSKERSRDRTERERSKEPKI 81


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 428 RNEAAYRSAYLTT*DEKKVCLEPERNSEPSM 520
           +NE +YR    T+ +  +   E ER+ EP +
Sbjct: 51  KNENSYRKYRKTSKERSRDRTERERSKEPKI 81


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 428 RNEAAYRSAYLTT*DEKKVCLEPERNSEPSM 520
           +NE +YR    T+ +  +   E ER+ EP +
Sbjct: 51  KNENSYRKYRKTSKERSRDRTERERSKEPKI 81


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 428 RNEAAYRSAYLTT*DEKKVCLEPERNSEPSM 520
           +NE +YR    T+ +  +   E ER+ EP +
Sbjct: 51  KNENSYRKYRKTSKERSRDRTERERSKEPKI 81


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 428 RNEAAYRSAYLTT*DEKKVCLEPERNSEPSM 520
           +NE +YR    T+ +  +   E ER+ EP +
Sbjct: 51  KNENSYRKYRKTSKERSRDRTERERSKEPKI 81


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 428 RNEAAYRSAYLTT*DEKKVCLEPERNSEPSM 520
           +NE +YR    T+ +  +   E ER+ EP +
Sbjct: 51  KNENSYRKYRKTSKERSRDRTERERSKEPKI 81


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 670 CQLFAQLQTXDVQLGDMYKDLDSSTKEK 587
           CQ+  QL   D+Q+  +Y +  S  K+K
Sbjct: 116 CQMEFQLYPMDIQICPIYIESFSYHKQK 143


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 428 RNEAAYRSAYLTT*DEKKVCLEPERNSEPSMPYARSILC 544
           +NE  YR    T+ +  +   E ER+ EP +  + S  C
Sbjct: 273 KNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNSC 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,493
Number of Sequences: 438
Number of extensions: 4544
Number of successful extensions: 51
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)