Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_J10
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 40 3e-04
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 39 7e-04
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 32 0.11
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 31 0.15
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.59
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 29 0.79
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 29 1.0
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 28 1.8
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 27 2.4
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -2
Query: 551 CHRCQAFGHASNNCHRAVRCVRCAG--EHIVADCPRPREGPFICANCG-KGHAAVDKRCV 381
CH C+ GH S +C V C C +HI CP ++ C NCG GH A RC
Sbjct: 89 CHNCKGNGHISKDCPH-VLCTTCGAIDDHISVRCPWTKK----CMNCGLLGHIAA--RCS 141
Query: 380 FYRRR 366
R+R
Sbjct: 142 EPRKR 146
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 39.1 bits (87), Expect = 7e-04
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -2
Query: 566 RGPAQCHRCQAFGHASNNCHRAVRCVRCAG-EHIVADCPRPREGPFICANCGK-GHAAVD 393
R C+ C ++GH + +C V+C C H +C + +G +C C + GH AV+
Sbjct: 113 RSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQASDGQ-LCYKCNQPGHIAVN 171
Score = 32.7 bits (71), Expect = 0.064
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 563 GPAQCHRCQAFGHASNNCHRAVRCVRC-AGEHIVADCPRPREGPFICANCG-KGHAAVD 393
GP +C+ C GH + C + C C H ++C P++ C CG GH D
Sbjct: 16 GP-RCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEK-TCYACGTAGHLVRD 72
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 518 NNCHRAVRCVRCAGE-HIVADCPRPREGPFICANCG-KGHA 402
N +R C C + HIV DCP ++ IC CG K H+
Sbjct: 71 NQRNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHS 111
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 228 PFPSG*YSTCHRGGQRNSGYPDGRGEPSTTGHKAPPGPPFN 106
P P G Y+ H N+GYP G P++ PP P N
Sbjct: 154 PIPQGGYNA-HYSSPYNNGYPIGAVNPTSAIPAQPPAQPVN 193
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.5 bits (63), Expect = 0.59
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = -2
Query: 581 GWRPSRGPAQCHRCQAFGHASNNCHRAVRCVRCAGEHIVADCP 453
GW ++ Q A VRC C G H A CP
Sbjct: 102 GWTTTKEEEQDEAALAAAKVKAKGSSVVRCRACKGNHFTAQCP 144
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 500 VRCVRCAGEHIVADCPRPREGPFICANCGKGHAAVDKRCVFYRRR 366
VRC C +H+ A CP IC CG H + C R +
Sbjct: 1309 VRCRCCGIKHLPAHCPLSIVPLEICFLCGTPHFSGRDTCPMLRNK 1353
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 342 NSDPHHPRPPAVEHTPLVNSGVALPAVGADEGSLPWPRAVR 464
N+DP P A EH P + ++P V A+ S P RA++
Sbjct: 151 NTDPLRLPPIATEHDPFAHLRSSMPLVMANSLSPPSSRALK 191
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.9 bits (59), Expect = 1.8
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = -3
Query: 628 CTQLKNCCTCRGCQLRDGVQAEDLRSVIAARPSDTPPTTATEQSAACDVRVSTLWRTARG 449
CTQLK CT ++ Q + SV PS+ TT ++ + + L RG
Sbjct: 47 CTQLKIPCTYHLPPIKRNKQKKQQDSVSDDTPSEATTTTNDDRDPKYNALGNNL-DAVRG 105
Query: 448 QGRDPSSAPTA----GRATPLLTSGV 383
+ P+ A GR PL +G+
Sbjct: 106 KVISPTQGSDARGPDGRQVPLNLAGI 131
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 2.4
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Frame = -1
Query: 270 ISEGQGQGKEFTSPPFPSG*----YSTCHRGG---QRNSGYPDGRGEPSTTGHKAPP 121
+++G G G F SP PSG Y + GG QR G DGRG + GH P
Sbjct: 416 MNQGTGDGVPF-SPSMPSGSSRGGYHGRNPGGPNRQRYRGRRDGRGGNTGGGHSFHP 471
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,719
Number of Sequences: 5004
Number of extensions: 63523
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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