Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_J06
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           29   3.1  
07_03_1067 + 23728642-23728690,23728832-23729010                       29   4.0  
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186...    28   7.1  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -2

Query: 273 FXGGPPPXGAPXAXGGXKGXSPKGXXPXGXXX*PF 169
           F  GPPP G P    G  G  P G  P G    PF
Sbjct: 208 FMRGPPPMGPPQVRPGMPGGPPPGMRP-GMPPPPF 241


>07_03_1067 + 23728642-23728690,23728832-23729010
          Length = 75

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 194 GLXPFGEXPFXPPXAXGAPXGGGPPXKXFXPP 289
           G  P G  P   P A G P  G PP + + PP
Sbjct: 23  GYPPPGYPPAGYPPAQGYPPAGYPPQQGYPPP 54


>06_03_0927 +
           26015956-26018230,26018323-26018471,26018550-26018618,
           26018701-26018853,26018927-26019090,26019207-26019354,
           26020348-26020470,26020560-26020647,26020781-26020950
          Length = 1112

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 267 GGPPPXGAPXAXGGXKGXSPKGXXP 193
           GGPPP  AP + GG  G SP    P
Sbjct: 164 GGPPPP-APTSGGGGGGGSPTALSP 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,005,449
Number of Sequences: 37544
Number of extensions: 184759
Number of successful extensions: 222
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)