Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_J06
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 1.2
U70845-2|AAB09100.1| 102|Caenorhabditis elegans Hypothetical pr... 30 1.6
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 3.6
AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical ... 29 4.8
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 30.7 bits (66), Expect = 1.2
Identities = 29/103 (28%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Frame = -2
Query: 462 GXPPXGGXKXKNFSPXXXPPXGGXKXLFX-GGXXXXXXXXXXXXXXXXXXPQKXWVPXFG 286
G PP GG F+P PP GG F G P
Sbjct: 339 GAPPSGGPPGP-FNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDP 397
Query: 285 GXKXFXGGPP----PXGAPXAXGGXKGXSPKGXXPXGXXX*PF 169
GGPP P GAP + G +P G P G PF
Sbjct: 398 SGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPF 440
Score = 30.7 bits (66), Expect = 1.2
Identities = 29/103 (28%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Frame = -2
Query: 462 GXPPXGGXKXKNFSPXXXPPXGGXKXLFX-GGXXXXXXXXXXXXXXXXXXPQKXWVPXFG 286
G PP GG F+P PP GG F G P
Sbjct: 414 GAPPSGGPPGP-FNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNP 472
Query: 285 GXKXFXGGPP----PXGAPXAXGGXKGXSPKGXXPXGXXX*PF 169
GGPP P GAP + G +P G P G PF
Sbjct: 473 SGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPF 515
Score = 30.3 bits (65), Expect = 1.6
Identities = 29/103 (28%), Positives = 31/103 (30%), Gaps = 5/103 (4%)
Frame = -2
Query: 462 GXPPXGGXKXKNFSPXXXPPXGGXKXLFX-GGXXXXXXXXXXXXXXXXXXPQKXWVPXFG 286
G PP GG F P PP GG F G P
Sbjct: 264 GAPPSGGPPGP-FDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNP 322
Query: 285 GXKXFXGGPP----PXGAPXAXGGXKGXSPKGXXPXGXXX*PF 169
GGPP P GAP + G +P G P G PF
Sbjct: 323 SGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPF 365
Score = 30.3 bits (65), Expect = 1.6
Identities = 29/103 (28%), Positives = 31/103 (30%), Gaps = 5/103 (4%)
Frame = -2
Query: 462 GXPPXGGXKXKNFSPXXXPPXGGXKXLFX-GGXXXXXXXXXXXXXXXXXXPQKXWVPXFG 286
G PP GG F P PP GG F G P
Sbjct: 324 GAPPSGGPPGP-FDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDP 382
Query: 285 GXKXFXGGPP----PXGAPXAXGGXKGXSPKGXXPXGXXX*PF 169
GGPP P GAP + G +P G P G PF
Sbjct: 383 SGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPF 425
Score = 30.3 bits (65), Expect = 1.6
Identities = 29/103 (28%), Positives = 31/103 (30%), Gaps = 5/103 (4%)
Frame = -2
Query: 462 GXPPXGGXKXKNFSPXXXPPXGGXKXLFX-GGXXXXXXXXXXXXXXXXXXPQKXWVPXFG 286
G PP GG F P PP GG F G P
Sbjct: 354 GAPPSGGPPGP-FDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNP 412
Query: 285 GXKXFXGGPP----PXGAPXAXGGXKGXSPKGXXPXGXXX*PF 169
GGPP P GAP + G +P G P G PF
Sbjct: 413 SGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPF 455
Score = 30.3 bits (65), Expect = 1.6
Identities = 29/103 (28%), Positives = 31/103 (30%), Gaps = 5/103 (4%)
Frame = -2
Query: 462 GXPPXGGXKXKNFSPXXXPPXGGXKXLFX-GGXXXXXXXXXXXXXXXXXXPQKXWVPXFG 286
G PP GG F P PP GG F G P
Sbjct: 369 GAPPSGGPPGP-FDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNP 427
Query: 285 GXKXFXGGPP----PXGAPXAXGGXKGXSPKGXXPXGXXX*PF 169
GGPP P GAP + G +P G P G PF
Sbjct: 428 SGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPF 470
Score = 30.3 bits (65), Expect = 1.6
Identities = 29/103 (28%), Positives = 31/103 (30%), Gaps = 5/103 (4%)
Frame = -2
Query: 462 GXPPXGGXKXKNFSPXXXPPXGGXKXLFX-GGXXXXXXXXXXXXXXXXXXPQKXWVPXFG 286
G PP GG F P PP GG F G P
Sbjct: 384 GAPPSGGPPGP-FDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNP 442
Query: 285 GXKXFXGGPP----PXGAPXAXGGXKGXSPKGXXPXGXXX*PF 169
GGPP P GAP + G +P G P G PF
Sbjct: 443 SGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPF 485
Score = 29.1 bits (62), Expect = 3.6
Identities = 29/103 (28%), Positives = 31/103 (30%), Gaps = 5/103 (4%)
Frame = -2
Query: 462 GXPPXGGXKXKNFSPXXXPPXGGXKXLFXGGXXXXXXXXXXXXXXXXXXPQKXWVPXFG- 286
G PP GG F P PP GG F P F
Sbjct: 174 GAPPSGGPPGP-FGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNP 232
Query: 285 GXKXFXGGPP----PXGAPXAXGGXKGXSPKGXXPXGXXX*PF 169
GGPP P GAP + G +P G P G PF
Sbjct: 233 SGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPF 275
>U70845-2|AAB09100.1| 102|Caenorhabditis elegans Hypothetical
protein F22H10.2 protein.
Length = 102
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 194 GLXPFGEXPFXPPXAXGAPXGGGPP 268
G P+G+ F PP G P G PP
Sbjct: 23 GYNPYGQQGFAPPPVFGGPGGYAPP 47
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = -2
Query: 297 PXFGGXKXFXGGPPPXGAPXAXG-GXKGXSPKGXXPXGXXX*PFXAP 160
P GG F GPPP G P A G G P G P G P P
Sbjct: 425 PPQGGPGGF--GPPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGGNP 469
>AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical
protein Y55F3AR.2 protein.
Length = 254
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 267 GGPPPXGAPXAXGGXKGXSPKGXXPXG 187
GG P GAP A G G +P+ P G
Sbjct: 214 GGGPAPGAPRAGGSGAGGAPRPPPPAG 240
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,260,680
Number of Sequences: 27780
Number of extensions: 130987
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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