Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_I22
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    27   4.2  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   4.2  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    26   7.3  

>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 489 QEHHGEHGAGRQRVCRGASPGKTS 560
           Q HH + GA  QRVC    P KTS
Sbjct: 216 QAHH-QDGAPLQRVCSAPDPPKTS 238


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
            Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 709  RMHNSDEMDFV--XDKKNIQYXRVRSVGC 629
            ++ NSDEMD +    +KN+Q  R  ++GC
Sbjct: 1058 QIRNSDEMDRILRRKRKNLQRKRSGTIGC 1086


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 587 RWKLAWQCSRCLSRRR 540
           RW +AW C + LSR R
Sbjct: 93  RWAIAWFCEKRLSRAR 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,176
Number of Sequences: 5004
Number of extensions: 35214
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)