Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_I15
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    28   1.4  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    28   1.4  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   2.4  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   5.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.5  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    26   7.3  

>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/87 (22%), Positives = 31/87 (35%)
 Frame = -3

Query: 782 HNMXVLPLXIKPPSPGIXGTSTRSSNPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPX 603
           H + +     +PPS  +  +   +  P    P  P +  +  NP TP      P      
Sbjct: 235 HGVRIQLSWARPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF-SPINPYYAKSW 293

Query: 602 SSEAPSAYLTPSSLGMXKGVSPPYFQV 522
           +  A +  L P   G+  G   PY  V
Sbjct: 294 NHTASAPLLPP---GLKNGSDYPYLSV 317


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -3

Query: 752 KPPSPGIXGTSTRSSNPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPXSSEAPSAYLT 573
           +PPSPGI     R+S   F +PT     S+            + G+ P  SS A  A+L+
Sbjct: 494 RPPSPGIVTPPQRTSPSFFVSPTESTRQSLDSRRSFEHSTSSSSGISPSHSS-ASLAHLS 552

Query: 572 PSS 564
            +S
Sbjct: 553 QAS 555


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 149 MARIYQLAVDLGGREXSLNRCREKSSFVVLXNRPDVVVQYG 271
           +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 114 LADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 513 ITSFAPY*SSFHAXSAPLLQLTPSSKTSS 427
           + SF PY S F A   P L ++PS+  +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 22/69 (31%), Positives = 26/69 (37%)
 Frame = -3

Query: 740 PGIXGTSTRSSNPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPXSSEAPSAYLTPSSL 561
           P I   S+ SS P    P  P   +    PL P  +   P   PP    APS    P  L
Sbjct: 325 PPIGNGSSNSSLPP--PPPPPRSNAAGSIPLPPQGRSAPP---PPPPRSAPSTGRQPPPL 379

Query: 560 GMXKGVSPP 534
              + VS P
Sbjct: 380 SSSRAVSNP 388


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 629 FAPGLKPPXSSEAPSAYLTPSSLGMXKGVSPPYFQ 525
           F  G +P         +L P S+G+  G S P F+
Sbjct: 192 FILGWRPSDMDNGYDPFLNPDSIGVEHGFSDPVFR 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,200
Number of Sequences: 5004
Number of extensions: 47842
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)