Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_I15
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    32   0.47 
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    31   0.82 
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892...    30   1.9  
11_06_0610 - 25449085-25453284                                         30   2.5  
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333...    28   7.6  

>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = -3

Query: 749  PPSPGIXGTS-TRSSNPRFHTPTTPDL--TSISINPLTPX*KEFAPGLKPPXSSEAPSAY 579
            P SP    TS + S     ++PT+P    TS   +P +P     +P   P      PS  
Sbjct: 1761 PTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHA 1820

Query: 578  LTPSSLGMXKGVSPPY 531
             +PSS       SP Y
Sbjct: 1821 YSPSSPNYYSSTSPTY 1836


>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = -3

Query: 749  PPSPGIXGTS-TRSSNPRFHTPTTPDL--TSISINPLTPX*KEFAPGLKPPXSSEAPSAY 579
            P SP    TS + S     ++PT+P    TS S +P +P     +P   P  +  +PS  
Sbjct: 1699 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHA 1758

Query: 578  LTPSS--LGMXKGVSPPY 531
             +PSS  L      SP Y
Sbjct: 1759 YSPSSPRLSPYSQTSPNY 1776


>01_06_0565 +
           30287253-30287502,30287522-30289010,30289133-30289277,
           30289679-30289729
          Length = 644

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = -3

Query: 749 PPSPGIXGTSTRSSNPRFHTPT---TPDLTSISINPLTPX*KEFAPGLKPPXSSEAPSAY 579
           PPSP I  + T       +TPT   TP   S   +P TP     +    P  +  +PS+ 
Sbjct: 105 PPSPSIGTSPTTPGGGGGYTPTPSDTPPSPSSDTSPSTPG-GGCSSSPTPCDAPPSPSSD 163

Query: 578 LTPSSLGMXKGVSP 537
            +P++ G   G SP
Sbjct: 164 TSPTTPGGGGGYSP 177


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 764 PLXIKPPSPGIXGTSTRSSNPRFHTPTTPDLTSIS-INPLTPX*KEFAPGLKPPXSSE 594
           P    PP+P    +S     P  HTP+ P+ T  S  +P TP  K  +P   PP + E
Sbjct: 613 PAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP---PPPTPE 667


>01_01_0448 -
           3332238-3332330,3332414-3332481,3332570-3332618,
           3332716-3332798,3332900-3333023,3333389-3333486,
           3333555-3333634,3333712-3333782,3333872-3333953,
           3334158-3334237,3334365-3334416,3334843-3334958
          Length = 331

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 725 TSTRSSNPRFHTPTTP 678
           T+TR S PR H PTTP
Sbjct: 6   TATRLSPPRLHAPTTP 21


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,507,754
Number of Sequences: 37544
Number of extensions: 354155
Number of successful extensions: 865
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)