Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_I13
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 457 GTLLKPNMVTASQSCKKTYTPNDVARATVTALLRTVPAAVPGVTFLSG 314
           GT+       AS +  K  TP  +A  + TA     P +VP  + ++G
Sbjct: 18  GTIASVVAGAASLTLVKAETPEHLAGTSTTAAATPTPPSVPVGSAVAG 65


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 577 LSSPNSYLMASTTWTAPQKVT 515
           L+S N+YL+ + T T P KV+
Sbjct: 231 LTSLNAYLIKNQTITCPIKVS 251


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 577 LSSPNSYLMASTTWTAPQKVT 515
           L+S N+YL+ + T T P KV+
Sbjct: 231 LTSLNAYLIKNQTITCPIKVS 251


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 577 LSSPNSYLMASTTWTAPQKVT 515
           L+S N+YL+ + T T P KV+
Sbjct: 282 LTSLNAYLIKNQTITCPIKVS 302


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 577 LSSPNSYLMASTTWTAPQKVT 515
           L+S N+YL+ + T T P KV+
Sbjct: 231 LTSLNAYLIKNQTITCPIKVS 251


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 460 RGTRGGRSAPCTRRPERPQS 519
           R  +  +  PCT+ P  PQ+
Sbjct: 304 RAEKDPKKMPCTQPPSAPQN 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,719
Number of Sequences: 438
Number of extensions: 3583
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)