Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_I12
         (1045 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0145 - 12749288-12751510                                         26   1.8  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    26   4.1  
12_02_0954 - 24757417-24758214                                         29   8.1  

>09_03_0145 - 12749288-12751510
          Length = 740

 Score = 25.8 bits (54), Expect(2) = 1.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 359 FFXKLXFXKXPXXKXPPPPPP 421
           F  K  F   P    PPPPPP
Sbjct: 15  FLSKPPFKPKPTNPSPPPPPP 35



 Score = 23.4 bits (48), Expect(2) = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 404 PPPPPPG 424
           PPPPPPG
Sbjct: 32  PPPPPPG 38


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 25.8 bits (54), Expect(2) = 4.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 404 PPPPPPGXXGRXXTQXXXXXXPP 472
           PPPPPPG   R          PP
Sbjct: 253 PPPPPPGPPPREIVPGQTLLPPP 275



 Score = 22.2 bits (45), Expect(2) = 4.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 389 PXXKXPPPPPP 421
           P    PPPPPP
Sbjct: 227 PPLPPPPPPPP 237


>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +2

Query: 404 PPPPPPGXXGRXXTQXXXXXXPPXXXXXXKXGGG 505
           PPPPPP   G    Q      PP        GGG
Sbjct: 15  PPPPPPRVVGVQQQQQQEAVVPPPPAMAAAAGGG 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,702,078
Number of Sequences: 37544
Number of extensions: 353278
Number of successful extensions: 5961
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3077
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3082779744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)