Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_I12
         (1045 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    24   8.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    24   8.1  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    24   8.1  

>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 24.2 bits (50), Expect(2) = 8.1
 Identities = 15/68 (22%), Positives = 17/68 (25%)
 Frame = +2

Query: 407 PPPPPGXXGRXXTQXXXXXXPPXXXXXXKXGGGXXXXXXXXXXXXXXXXXXNTPXXXLGX 586
           PPPPP        +      PP         GG                  + P   L  
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 335

Query: 587 GXGGGXPP 610
              GG PP
Sbjct: 336 PQAGGSPP 343



 Score = 22.6 bits (46), Expect(2) = 8.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 389 PXXKXPPPPPP 421
           P    PPPPPP
Sbjct: 254 PAGSPPPPPPP 264


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 24.2 bits (50), Expect(2) = 8.1
 Identities = 15/68 (22%), Positives = 17/68 (25%)
 Frame = +2

Query: 407 PPPPPGXXGRXXTQXXXXXXPPXXXXXXKXGGGXXXXXXXXXXXXXXXXXXNTPXXXLGX 586
           PPPPP        +      PP         GG                  + P   L  
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 320

Query: 587 GXGGGXPP 610
              GG PP
Sbjct: 321 PQAGGSPP 328



 Score = 22.6 bits (46), Expect(2) = 8.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 389 PXXKXPPPPPP 421
           P    PPPPPP
Sbjct: 239 PAGSPPPPPPP 249


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 24.2 bits (50), Expect(2) = 8.1
 Identities = 15/68 (22%), Positives = 17/68 (25%)
 Frame = +2

Query: 407 PPPPPGXXGRXXTQXXXXXXPPXXXXXXKXGGGXXXXXXXXXXXXXXXXXXNTPXXXLGX 586
           PPPPP        +      PP         GG                  + P   L  
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 314

Query: 587 GXGGGXPP 610
              GG PP
Sbjct: 315 PQAGGSPP 322



 Score = 22.6 bits (46), Expect(2) = 8.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 389 PXXKXPPPPPP 421
           P    PPPPPP
Sbjct: 233 PAGSPPPPPPP 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,219,873
Number of Sequences: 27780
Number of extensions: 180657
Number of successful extensions: 1955
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2772493070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)