Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_I10
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    31   0.93 
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    29   3.8  

>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 426 PQREWXGXPPPFXGX--PPXWGARKKKNFPFWXRPKPPWAK 542
           P R W G PPP+     PP +G       P W RP PPW +
Sbjct: 34  PLRPW-GPPPPWHRNRGPPPFGPP-----PPWDRPPPPWRR 68



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 444 GXPPPFXGXPPXWGARKKKNFPFWXRPKPP 533
           G PPP+   PP W        P W  P PP
Sbjct: 54  GPPPPWDRPPPPWRRPPWHRRPPWGLPPPP 83


>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
            protein F52G3.1 protein.
          Length = 1172

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 423  FPQREWXGXPPPFXGXPPXWGARKKKNFPFW 515
            FPQ+ +   PPP    PP  G   + N PF+
Sbjct: 1046 FPQQNFTQPPPPVMRFPPSNGTSHQDNGPFF 1076


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,473,365
Number of Sequences: 27780
Number of extensions: 123381
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)