Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_I05
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    30   2.5  

>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/68 (29%), Positives = 21/68 (30%)
 Frame = -2

Query: 750 PKRXXPEXSXXGGVGXXRXXPXXXPXPRTLAXXEAPXGNGPKXSFPXNAAPXHALTAGXX 571
           P    P     G  G     P   P P      EAP   GP   F  + AP      G  
Sbjct: 172 PSGAPPSGGPPGPFGPSGAPPSGGP-PGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPF 230

Query: 570 XPXXAPGS 547
            P  AP S
Sbjct: 231 NPSGAPPS 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,697,760
Number of Sequences: 27780
Number of extensions: 120578
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)