Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_I04
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...   152   5e-38
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...   144   1e-35
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.3  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    27   4.0  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   5.2  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   6.9  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  152 bits (369), Expect = 5e-38
 Identities = 75/126 (59%), Positives = 91/126 (72%)
 Frame = -2

Query: 484 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 305
           V KA  AQ+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62

Query: 304 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAY 125
             P+ SE+AMKKIED+NTLVF VH  ANK  IK AVKKLY ++  K+NTLIRP+G KKA+
Sbjct: 63  VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAF 122

Query: 124 VRLARE 107
           V+L+ +
Sbjct: 123 VKLSAD 128


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  144 bits (349), Expect = 1e-35
 Identities = 71/126 (56%), Positives = 88/126 (69%)
 Frame = -2

Query: 484 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 305
           V KA  AQ+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62

Query: 304 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAY 125
             P+ SE+AMKKIED+NTLVF VH  ANK  IK AV+KLY +   K+NTLIRP+G KKA+
Sbjct: 63  VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAF 122

Query: 124 VRLARE 107
           V+L+ +
Sbjct: 123 VKLSAD 128


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +2

Query: 320 IHAISLRQRLPWVFRVPR--RFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFH 493
           + A  +  R P   R P+  RF+ L S++   + + PY+ P   F     S +    + H
Sbjct: 196 LRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMH 255

Query: 494 YFFLSLNPSL 523
               S  PSL
Sbjct: 256 RRTKSATPSL 265


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
 Frame = -3

Query: 345 LCLREIAWMPTTSLNSLSRLKQQ*RRLKITTPWSLLFTQVQTSTI------SRLQSRNSM 184
           + L  IA+  T SL  +   K+  R +  T PW +L +Q     I      +RL S+N  
Sbjct: 335 IVLESIAFESTDSLTVV--WKESTRTVFETVPWRILSSQATNGLIELVRSKTRLTSKNKT 392

Query: 183 I*MLL---KSTHSSGLMVRRKRTYDSLENYDALD 91
           +  +     +T SSG+M +  R  + + + +A++
Sbjct: 393 VSNVYDESNATISSGVMQKDLRKTEEIGSAEAME 426


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 584 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 495
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/51 (17%), Positives = 25/51 (49%)
 Frame = -2

Query: 325  MDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINV 173
            + A+++ +F    E  ++  +DN T   I H  + ++ + A     +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,252
Number of Sequences: 5004
Number of extensions: 47057
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)