Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_I03
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.8  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    26   5.5  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    25   9.5  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           25   9.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.5  

>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 632 AYAPS*PMQV*CSLTRPRIHLKSFQIIQSRVCRIAVGAPWFVRNVD 495
           AY+ +    V  +L+  RI+L+SFQ I +R C        FV+++D
Sbjct: 13  AYSSADSKHVPLTLSTRRINLQSFQSISARNCGSDARVLDFVKSID 58


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 451 SRRPCATSIKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 338
           SR      I R DT + + S PPVT    ++  WKA+D+
Sbjct: 39  SRSTPINPIIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -3

Query: 629 YAPS*PMQV*CSLTRPRIHLKSFQIIQSRVCRIAVGAPWFVRNVDLH 489
           YA + P Q+  S   PR  +K F+I    V  +     W ++    H
Sbjct: 236 YAKTGPKQIILSEAGPRFEMKLFEITLGTVDMVDADVEWKLKPYQRH 282


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 26/99 (26%), Positives = 43/99 (43%)
 Frame = -3

Query: 497 DLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVIS 318
           DL D+    S+++++ +  ++  D     +  + +     +  P D +     R  HV S
Sbjct: 185 DLSDEQSYRSLAEHIMAGILKKVDD----DKAVSIIVELVVGKPQDMI----LRTIHVYS 236

Query: 317 DPPDPLTVLLGTXXXXXXXXXSLATKGSTSKLTLRHSPL 201
             PD L V  GT         SL + GS SK  L+ SP+
Sbjct: 237 --PDSLIV--GTRGKALNSFQSLLSSGSVSKFCLQKSPI 271


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 332 KHVISDPPDPLTVL 291
           +H++ +PP PLTVL
Sbjct: 499 RHILDNPPKPLTVL 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,574
Number of Sequences: 5004
Number of extensions: 57105
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)