Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_I03
(805 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 62 7e-10
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 52 1e-06
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 52 1e-06
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 50 5e-06
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 50 5e-06
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 43 6e-04
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 43 6e-04
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 43 6e-04
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 38 0.012
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 38 0.012
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 38 0.012
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 38 0.016
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 35 0.11
AY058505-1|AAL13734.1| 422|Drosophila melanogaster LD21309p pro... 31 1.8
AF325529-1|AAK01218.1| 422|Drosophila melanogaster elongation i... 31 1.8
AE014297-297|AAN13249.1| 422|Drosophila melanogaster CG2922-PG,... 31 1.8
AE014297-296|AAN13248.1| 422|Drosophila melanogaster CG2922-PF,... 31 1.8
AE014297-295|AAN13247.1| 422|Drosophila melanogaster CG2922-PE,... 31 1.8
AE014297-294|AAN13246.1| 422|Drosophila melanogaster CG2922-PD,... 31 1.8
AE014297-293|AAF51995.1| 422|Drosophila melanogaster CG2922-PC,... 31 1.8
AE014297-292|AAG22214.1| 422|Drosophila melanogaster CG2922-PB,... 31 1.8
AE014297-291|AAF51996.1| 422|Drosophila melanogaster CG2922-PA,... 31 1.8
AE014134-843|AAF52203.1| 1940|Drosophila melanogaster CG16858-PA... 30 3.2
AY095199-1|AAM12292.1| 271|Drosophila melanogaster RE27458p pro... 29 7.4
AE013599-693|AAF59060.2| 271|Drosophila melanogaster CG8579-PA ... 29 7.4
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 62.5 bits (145), Expect = 7e-10
Identities = 33/89 (37%), Positives = 48/89 (53%)
Frame = -3
Query: 575 HLKSFQIIQSRVCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLI 396
H+K Q IQ++V R+ G WFVRN LH DL L ++ + S R+ D+ RH N L
Sbjct: 817 HIKRIQAIQNKVARLITGCEWFVRNTTLHRDLKLATVFDEINKHSSRYHDRLERHRNRLA 876
Query: 395 VAAGNYIPDPADRMESSRRRPKHVISDPP 309
A P R+ +RR+P+ +I+ P
Sbjct: 877 SALNR--SRPPRRL--NRRQPRDLITRSP 901
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 708 LGRXYPMICRRSKMSLRNKXTLYKTCIRPVMTYASVVFAHAAPHTLK 568
+ + Y ++ RSK+SL NK T+YK + P Y ++ A +K
Sbjct: 773 VAKHYWLLSSRSKLSLSNKLTIYKQILAPNWKYGCQIWGLACDSHIK 819
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 51.6 bits (118), Expect = 1e-06
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = -3
Query: 581 RIHLKSFQIIQSRVCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENP 402
R ++ Q QSR+ RI GAPW++RN ++H DL ++ + + + ++ +K H NP
Sbjct: 806 RSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNP 865
Query: 401 L 399
L
Sbjct: 866 L 866
Score = 32.3 bits (70), Expect = 0.80
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -2
Query: 690 MICRRSKMSLRNKXTLYKTCIRPVMTYASVVFAHAAPHTLKIL 562
+I RS +SL K LY + ++P+ TY S ++ +A+ + I+
Sbjct: 770 LINARSPLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDII 812
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 51.6 bits (118), Expect = 1e-06
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = -3
Query: 581 RIHLKSFQIIQSRVCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENP 402
R ++ Q QSR+ RI GAPW++RN ++H DL ++ + + + ++ +K H NP
Sbjct: 806 RSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNP 865
Query: 401 L 399
L
Sbjct: 866 L 866
Score = 32.3 bits (70), Expect = 0.80
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -2
Query: 690 MICRRSKMSLRNKXTLYKTCIRPVMTYASVVFAHAAPHTLKIL 562
+I RS +SL K LY + ++P+ TY S ++ +A+ + I+
Sbjct: 770 LINARSPLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDII 812
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 49.6 bits (113), Expect = 5e-06
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = -3
Query: 575 HLKSFQIIQSRVCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLI 396
HL +I+Q++ R GAPW++R D+ DL + + LQ+ + ++ ++ H N L
Sbjct: 822 HLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPNSLA 881
Query: 395 VAAGNYIPDPAD-RMESSRRRPKHVISDPPD 306
G AD R RR +H D P+
Sbjct: 882 RKLGTAAVVNADPRTRVKRRLKRHHPHDLPN 912
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 49.6 bits (113), Expect = 5e-06
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = -3
Query: 575 HLKSFQIIQSRVCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLI 396
HL +I+Q++ R GAPW++R D+ DL + + LQ+ + ++ ++ H N L
Sbjct: 624 HLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYLERLNVHPNSLA 683
Query: 395 VAAGNYIPDPAD-RMESSRRRPKHVISDPPD 306
G AD R RR +H D P+
Sbjct: 684 RKLGTAAVVNADPRTRVKRRLKRHHPHDLPN 714
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 42.7 bits (96), Expect = 6e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = -2
Query: 711 ILGRXYPMICRRSKMSLRNKXTLYKTCIRPVMTYASVVFAHAAPHTLKIL 562
I+ YP+I R+SK+S+ NK ++KT P++ Y S V+ A +K L
Sbjct: 797 IICTLYPLINRKSKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKL 846
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 42.7 bits (96), Expect = 6e-04
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = -3
Query: 560 QIIQSRVCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPL 399
Q++Q+R R P++VR LH DL+L ++ + + + R+ D+ RH + L
Sbjct: 828 QVLQNRAMRAITDCPYYVRGTTLHRDLNLHTVEEQISRHTSRYSDRLRRHHSIL 881
Score = 33.9 bits (74), Expect = 0.26
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 796 EGQNLGVTLDSRXTFRPHIKTVTR 725
+ + LG+TLD R TF PH+K TR
Sbjct: 750 QAKYLGITLDKRLTFGPHLKATTR 773
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 42.7 bits (96), Expect = 6e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = -2
Query: 711 ILGRXYPMICRRSKMSLRNKXTLYKTCIRPVMTYASVVFAHAAPHTLKIL 562
I+ YP+I R+SK+S+ NK ++KT P++ Y S V+ A +K L
Sbjct: 745 IICTLYPLINRKSKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKL 794
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 38.3 bits (85), Expect = 0.012
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -3
Query: 569 KSFQIIQSRVCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLI-- 396
K Q ++++ R + A + R D+ +++S + AS R+ + HENPLI
Sbjct: 883 KKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYD 942
Query: 395 VAAGNYIPDPADRMESSRRR 336
+ Y P +R+E S+ R
Sbjct: 943 LLINAYKP---NRLELSKNR 959
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 38.3 bits (85), Expect = 0.012
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -3
Query: 569 KSFQIIQSRVCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLI-- 396
K Q ++++ R + A + R D+ +++S + AS R+ + HENPLI
Sbjct: 883 KKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYD 942
Query: 395 VAAGNYIPDPADRMESSRRR 336
+ Y P +R+E S+ R
Sbjct: 943 LLINAYKP---NRLELSKNR 959
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 38.3 bits (85), Expect = 0.012
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -3
Query: 569 KSFQIIQSRVCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLI-- 396
K Q ++++ R + A + R D+ +++S + AS R+ + HENPLI
Sbjct: 883 KKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYD 942
Query: 395 VAAGNYIPDPADRMESSRRR 336
+ Y P +R+E S+ R
Sbjct: 943 LLINAYKP---NRLELSKNR 959
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 37.9 bits (84), Expect = 0.016
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -3
Query: 569 KSFQIIQSRVCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLI-- 396
K Q ++++ R + A + R D+ +++S + AS R+ + HENPLI
Sbjct: 436 KKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDETFDKASQRYANSLTDHENPLIYD 495
Query: 395 VAAGNYIPDPADRMESSRRR 336
+ Y P +R+E S+ R
Sbjct: 496 LLINAYKP---NRLELSKNR 512
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 35.1 bits (77), Expect = 0.11
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = -3
Query: 560 QIIQSRVCRIAVGAPWFVRNVDLHDDLDLESIS 462
Q QS++ R GAPW+VR+ ++ DL++ S++
Sbjct: 815 QRAQSKILRTITGAPWYVRSENIQRDLNIPSVT 847
Score = 31.5 bits (68), Expect = 1.4
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 675 SKMSLRNKXTLYKTCIRPVMTYASVVFAHAAPHTLKILSNHSIPCLQDSRRSP-VVRQE 502
S +SL +K LY + ++P+ TY S ++ +A+ + I+ L+ +P VR E
Sbjct: 777 SPLSLDHKVLLYNSILKPIWTYGSQLWGNASNSNIDIIQRAQSKILRTITGAPWYVRSE 835
>AY058505-1|AAL13734.1| 422|Drosophila melanogaster LD21309p
protein.
Length = 422
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 479 DLESISKYLQSASMR-HFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDP 303
DLE ISKYL SA + + + +++A G +P + + + R + I D P+
Sbjct: 45 DLEQISKYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFDAPES 104
Query: 302 L 300
+
Sbjct: 105 M 105
>AF325529-1|AAK01218.1| 422|Drosophila melanogaster elongation
initiation factor 5C protein.
Length = 422
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 479 DLESISKYLQSASMR-HFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDP 303
DLE ISKYL SA + + + +++A G +P + + + R + I D P+
Sbjct: 45 DLEQISKYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFDAPES 104
Query: 302 L 300
+
Sbjct: 105 M 105
>AE014297-297|AAN13249.1| 422|Drosophila melanogaster CG2922-PG,
isoform G protein.
Length = 422
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 479 DLESISKYLQSASMR-HFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDP 303
DLE ISKYL SA + + + +++A G +P + + + R + I D P+
Sbjct: 45 DLEQISKYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFDAPES 104
Query: 302 L 300
+
Sbjct: 105 M 105
>AE014297-296|AAN13248.1| 422|Drosophila melanogaster CG2922-PF,
isoform F protein.
Length = 422
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 479 DLESISKYLQSASMR-HFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDP 303
DLE ISKYL SA + + + +++A G +P + + + R + I D P+
Sbjct: 45 DLEQISKYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFDAPES 104
Query: 302 L 300
+
Sbjct: 105 M 105
>AE014297-295|AAN13247.1| 422|Drosophila melanogaster CG2922-PE,
isoform E protein.
Length = 422
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 479 DLESISKYLQSASMR-HFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDP 303
DLE ISKYL SA + + + +++A G +P + + + R + I D P+
Sbjct: 45 DLEQISKYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFDAPES 104
Query: 302 L 300
+
Sbjct: 105 M 105
>AE014297-294|AAN13246.1| 422|Drosophila melanogaster CG2922-PD,
isoform D protein.
Length = 422
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 479 DLESISKYLQSASMR-HFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDP 303
DLE ISKYL SA + + + +++A G +P + + + R + I D P+
Sbjct: 45 DLEQISKYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFDAPES 104
Query: 302 L 300
+
Sbjct: 105 M 105
>AE014297-293|AAF51995.1| 422|Drosophila melanogaster CG2922-PC,
isoform C protein.
Length = 422
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 479 DLESISKYLQSASMR-HFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDP 303
DLE ISKYL SA + + + +++A G +P + + + R + I D P+
Sbjct: 45 DLEQISKYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFDAPES 104
Query: 302 L 300
+
Sbjct: 105 M 105
>AE014297-292|AAG22214.1| 422|Drosophila melanogaster CG2922-PB,
isoform B protein.
Length = 422
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 479 DLESISKYLQSASMR-HFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDP 303
DLE ISKYL SA + + + +++A G +P + + + R + I D P+
Sbjct: 45 DLEQISKYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFDAPES 104
Query: 302 L 300
+
Sbjct: 105 M 105
>AE014297-291|AAF51996.1| 422|Drosophila melanogaster CG2922-PA,
isoform A protein.
Length = 422
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 479 DLESISKYLQSASMR-HFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDP 303
DLE ISKYL SA + + + +++A G +P + + + R + I D P+
Sbjct: 45 DLEQISKYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFDAPES 104
Query: 302 L 300
+
Sbjct: 105 M 105
>AE014134-843|AAF52203.1| 1940|Drosophila melanogaster CG16858-PA
protein.
Length = 1940
Score = 30.3 bits (65), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 504 PDEP--RGSDGYPANTGLNDLKGF*VYAGPR 590
P EP +G GYP G+N LKG + GP+
Sbjct: 1096 PGEPGAKGLGGYPGRNGINGLKGATGFPGPQ 1126
>AY095199-1|AAM12292.1| 271|Drosophila melanogaster RE27458p
protein.
Length = 271
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 289 KSTVSGSGGSEMTCFGRRRLLSILSAGSGM*LPAATMRGFSCRAALSKWRMD 444
KS+ SG G + R++ I+S GSG A GF+ W D
Sbjct: 214 KSSCSGDSGGPLVLHDNNRIVGIVSFGSGEGCTAGRPAGFTRVTGYLDWIRD 265
>AE013599-693|AAF59060.2| 271|Drosophila melanogaster CG8579-PA
protein.
Length = 271
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 289 KSTVSGSGGSEMTCFGRRRLLSILSAGSGM*LPAATMRGFSCRAALSKWRMD 444
KS+ SG G + R++ I+S GSG A GF+ W D
Sbjct: 214 KSSCSGDSGGPLVLHDNNRIVGIVSFGSGEGCTAGRPAGFTRVTGYLDWIRD 265
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,796,451
Number of Sequences: 53049
Number of extensions: 723299
Number of successful extensions: 1871
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1871
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3757402116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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