Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_I03
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    29   2.9  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   6.8  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   6.8  
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    28   9.0  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   9.0  

>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 645  LYKTCIRPVMTYASVVFAHAAPHTLKILS 559
            LYKT + P+M Y S V+   APH+  +LS
Sbjct: 1022 LYKTYVAPIMNYCSEVY---APHSNSVLS 1047


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 790 QNLGVTLDSRXTFRPHIKTV 731
           ++LG+  DS+ TF+PHIK +
Sbjct: 196 RDLGILTDSKLTFKPHIKKI 215


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 491  HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 375
            H D + E+ ++ + S   RH  +    E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 491  HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 375
            H D + E+ ++ + S   RH  +    E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412


>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical protein
            ZK1193.2 protein.
          Length = 1250

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 309  GRIRDDVFWATSTAFHSVRRIGNVVTGGHDERVLVSCRFIEVAH 440
            G I D++++AT  A   V  IGN ++ GHD   ++   +  ++H
Sbjct: 1065 GSISDEMYYATVGA---VNTIGNAISIGHDHSRILLGTYDAISH 1105


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 368 PADRMESSRRRPKHVISDPPDP 303
           P     ++RRR +HV+S PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,700,298
Number of Sequences: 27780
Number of extensions: 346012
Number of successful extensions: 820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)