Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_I01
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    27   4.0  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   7.1  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   9.4  

>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 433 SARSTVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 290
           ++ STV  +P+    +    ++   +  S RPD LP   G R++ F S
Sbjct: 135 TSSSTVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = +1

Query: 364 SRNTPLDQNQPAGSGRDXPSTGRSNHSTAARXSAGS--APHGLTPSGRPL 507
           S NTP  + QP     +  +    + ST+   +A S   P G  P+   L
Sbjct: 33  SSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNASSVATPSGTAPTSASL 82


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 391 GSGPAGYSGTPAAPSGRPDGLPYRDGRR 308
           G  P     TP APS    G P+ +G++
Sbjct: 95  GDSPDSLVSTPTAPSANHHGNPFPNGKQ 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,969
Number of Sequences: 5004
Number of extensions: 46847
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)