Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_H21
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 192 4e-49
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 189 3e-48
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.3
06_01_0035 + 358669-359007,359458-359617,359723-360582 29 3.3
06_03_0543 + 21967787-21970261 29 5.7
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.5
11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558 28 9.9
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019... 28 9.9
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 192 bits (467), Expect = 4e-49
Identities = 88/159 (55%), Positives = 114/159 (71%)
Frame = -1
Query: 791 ARAXXAXENPXDVXVISSRPFGQRAVLKFXAHTGCYAYCGTFHTRCFTNQIQAAFREXRL 612
AR A ENP D+ V S+RP+GQRAVLKF +TG +A G FTNQ+Q +F E RL
Sbjct: 66 ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 125
Query: 611 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLARE 432
LI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR
Sbjct: 126 LILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARM 185
Query: 431 VLRLRGVLPRDQRWDVVVDLFSYRDPEESEKDEQQAKEQ 315
VL++RG + +WDV+VDLF YRDPEE+++ E++A Q
Sbjct: 186 VLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 189 bits (460), Expect = 3e-48
Identities = 86/155 (55%), Positives = 111/155 (71%)
Frame = -1
Query: 791 ARAXXAXENPXDVXVISSRPFGQRAVLKFXAHTGCYAYCGTFHTRCFTNQIQAAFREXRL 612
AR A ENP D+ V S+RP+GQRAVLKF +TG +A G FTNQ+Q +F E RL
Sbjct: 66 ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 125
Query: 611 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLARE 432
LI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR
Sbjct: 126 LILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARM 185
Query: 431 VLRLRGVLPRDQRWDVVVDLFSYRDPEESEKDEQQ 327
VL++RG + +WDV+VDLF YRDPEE+++ E++
Sbjct: 186 VLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_01_0035 + 358669-359007,359458-359617,359723-360582
Length = 452
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = -1
Query: 716 VLKFXAHTGCYAYCGTFHTRCFTNQIQAAFREXRLLIVLDPAQDHQPI 573
V F AH G G HTR F N AA + A H P+
Sbjct: 402 VRTFEAHCGPLGQYGMKHTRAFANMCNAALDHNHMAKAASKACMHPPV 449
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 458 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 369
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558
Length = 852
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 428 LRLRGVLPRDQRWDVVVDLFSYRDPEESEKDEQQ 327
+RL V R + +D+ +L SYR PE+ EQ+
Sbjct: 135 VRLGEVSHRRKAYDICANLNSYRPPEQDNGGEQE 168
>02_02_0574 -
11701359-11701460,11701469-11701570,11701725-11701922,
11702090-11704052,11705312-11706126
Length = 1059
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = -1
Query: 719 AVLKFXAHTGCYAYCGTFHTRCFTNQIQAAFREXRLLIVLDPAQDHQ--PITEASYVNIP 546
++L+ + G YA+ T+ + N+I+ +E R LIV+D + E + +
Sbjct: 239 SILRQFSEQG-YAWTETWCAQEIINKIRDEIKEKRYLIVIDDIWEKSAWECIECALIEND 297
Query: 545 VIALCNTDSPLRFVDIAIPCNTKSSHSI 462
+ T S R +D A PC+++ H++
Sbjct: 298 RGSRIITTS--RVLDAATPCSSEVDHTV 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,846,350
Number of Sequences: 37544
Number of extensions: 396864
Number of successful extensions: 1100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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