Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_H12
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 32 0.62
03_05_1101 - 30408944-30410410 31 1.1
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 30 2.5
12_02_1120 - 26228618-26229403 29 3.3
10_08_0793 - 20614583-20614897,20615417-20615660,20617713-206178... 29 4.4
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142 29 4.4
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 29 4.4
08_02_0707 - 20212190-20214592 29 5.8
10_08_0308 + 16660751-16661450,16661656-16661819,16662615-166628... 28 7.7
08_01_0371 - 3284103-3284582 28 7.7
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462... 28 7.7
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 31.9 bits (69), Expect = 0.62
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 447 TEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGR 569
+ E EH SS +H HR + H + EHR RH+R R
Sbjct: 778 SSEDEHEHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +3
Query: 387 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRR 542
S NY+ S +R H E +R H S HKH L R + EP H R
Sbjct: 725 SDEENYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHR 773
>03_05_1101 - 30408944-30410410
Length = 488
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 192 YWSPRAPTALSLGCAAS*ETVLWQVQPETST 100
Y+SPR L+LG AS LW ++PE S+
Sbjct: 294 YFSPRQVRELALGLEASNHPFLWVIRPEDSS 324
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 574 IRRPVRSCLAMRRCSGSAGGCRFFR*SACLCVLDKCSRLASSV 446
+R R A R C GSAG R R SA V+ + RL + V
Sbjct: 31 LRPAARLSFAPRWCGGSAGAARARRESAVTSVISRAPRLDAEV 73
>12_02_1120 - 26228618-26229403
Length = 261
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 319 GGETSAVAAHPVRENRADRLDGTEAGRRVRQTTRSRLQHGLPILEPP 179
GGE AA P R + + T R R+ +RS H ++ PP
Sbjct: 140 GGEVVQAAARPTRLTASSEAERTTTMARRRRRSRSHSSHHALMMTPP 186
>10_08_0793 -
20614583-20614897,20615417-20615660,20617713-20617899,
20618508-20618547,20618699-20618775,20618965-20619091
Length = 329
Score = 29.1 bits (62), Expect = 4.4
Identities = 25/82 (30%), Positives = 33/82 (40%)
Frame = +3
Query: 360 KLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHR 539
++ T L HH N RC+S ++ A L H H ++ L P E E R
Sbjct: 98 QIWTDMQLQDHHHECN----GPYCRCHSSSKHAKGSLLLLHHHH--QQQQLQRPNEMETR 151
Query: 540 RIARHERTGRLILQVTTTSDVS 605
R +TG L Q DVS
Sbjct: 152 RAEASTQTGFLRSQGICERDVS 173
>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
Length = 534
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 337 HKTFYHHANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPTAN 468
H+ F +FLP +I L+VPP LH V P P A+
Sbjct: 75 HRWFAQGFHFLPARIPMDGPSGWFLKVPPPLHTVDPPGSPPPAS 118
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 312 SPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHL 473
S PAT + + P +LLT+ TSH + N T S SH + + RE L
Sbjct: 685 SSPATASAAAASKKP-RLLTSQTTTSHTSTSNATTPRSFDTTSSHQDASFRESL 737
>08_02_0707 - 20212190-20214592
Length = 800
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 387 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARH 554
SHH +++ S + S TE + +E+ S H H H + H +E H++ H
Sbjct: 549 SHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSE-HHQQSGDH 603
>10_08_0308 +
16660751-16661450,16661656-16661819,16662615-16662800,
16663297-16663533
Length = 428
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = +2
Query: 173 GARGLQYRQSVLEA*SR---RLADPSAGLRTVEAICPVLAD----WVGRDRGS 310
GARG +R +L +L D AGLR + A CP LAD W RG+
Sbjct: 102 GARGAPHRMPLLANGPTLWYQLDDDVAGLRELLAACPSLADEPAPWYSLARGT 154
>08_01_0371 - 3284103-3284582
Length = 159
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/68 (30%), Positives = 26/68 (38%)
Frame = -1
Query: 319 GGETSAVAAHPVRENRADRLDGTEAGRRVRQTTRSRLQHGLPILEPPRSDCTFARVRRLV 140
GGE A A+ R A+ R VR+ R G P + P R C R L
Sbjct: 32 GGEAEASASQAWRRGDANVHSDVRVRRGVRRPLRRTATGGAPPMLPQRKRCPTNRRAMLR 91
Query: 139 GDCAVAGP 116
A +GP
Sbjct: 92 RGGARSGP 99
>05_04_0389 -
20845490-20845600,20845697-20846006,20846097-20846242,
20846319-20846426,20846508-20846615,20846997-20847109,
20847340-20847437,20847530-20847714,20847811-20847953,
20848293-20848377,20848486-20848624,20848686-20848780,
20848894-20849037,20849114-20849206,20849310-20849376,
20849529-20849641,20849750-20849845,20853885-20854058
Length = 775
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 248 LRTVEAICPVLADWVGRDRGSLTSGYLCRLTRHFTTMQTSYRNKSYQPPRKLQFYGF 418
LR E I +A ++ R +GS S Y+ +F SY SY L Y F
Sbjct: 281 LRAPEDIAFAVALFIARKKGSFVSYYMYHGGTNFGRFAASYVTTSYYDGAPLDEYDF 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,822,695
Number of Sequences: 37544
Number of extensions: 499016
Number of successful extensions: 1599
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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