Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_H11
(1160 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 40 7e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 39 0.002
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.016
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 30 0.026
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 30 0.53
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.93
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 23 1.9
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 5.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 6.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 8.7
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 39.9 bits (89), Expect = 7e-04
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = -2
Query: 1057 PPPPPPPPXXXXGXXXXXXXXXPPPPPPPXXXKKKK 950
PPPPPPPP PPPPPPP KK+K
Sbjct: 9 PPPPPPPPGFEP-------PSQPPPPPPPGYVKKRK 37
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = -3
Query: 1059 PPPPPPPPPXXXXGGXXXXXXXPPPPPPPXXXXKKK 952
PPPPPPPP PPPPPPP K+K
Sbjct: 9 PPPPPPPP-------GFEPPSQPPPPPPPGYVKKRK 37
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/28 (57%), Positives = 16/28 (57%)
Frame = -3
Query: 1056 PPPPPPPPXXXXGGXXXXXXXPPPPPPP 973
PPPPPPPP G PPPPPPP
Sbjct: 761 PPPPPPPPGVAGAG-----PPPPPPPPP 783
Score = 36.7 bits (81), Expect = 0.006
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 1059 PPPPPPPPPXXXXGGXXXXXXXPPPPPPP 973
PPPPPPPPP GG P P P
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 36.3 bits (80), Expect = 0.008
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = -2
Query: 1060 PPPPPPPPPXXXXGXXXXXXXXXPPPPPPP 971
PPPPPPPP G PPPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPP-------PPPPPPP 783
Score = 32.7 bits (71), Expect = 0.100
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -3
Query: 1059 PPPPPPPPPXXXXGGXXXXXXXPPPPPPP 973
P P P PPP GG PPPPPPP
Sbjct: 746 PAPIPVPPPAPIMGGP------PPPPPPP 768
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -2
Query: 1057 PPPPPPPPXXXXGXXXXXXXXXPPPPPPP 971
PPPPPPPP P P P
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 6/33 (18%)
Frame = -2
Query: 1051 PPPPPPXXXXGXXXXXXXXXPPP------PPPP 971
PPPPPP PPP PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.057
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 1057 PPPPPPPPXXXXGXXXXXXXXXPPPPPPP 971
PPPPPPP G PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 31.9 bits (69), Expect = 0.17
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -3
Query: 1056 PPPPPPPPXXXXGGXXXXXXXPPPPPPPXXXXKKK 952
PP PPP PPPPPPP + K
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGK 324
Score = 31.9 bits (69), Expect(2) = 0.016
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 1054 PPPPPPPXXXXGXXXXXXXXXPPPPPPPXXXKKKK 950
PP PPP PPPPPPP + K
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGK 324
Score = 30.3 bits (65), Expect = 0.53
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Frame = -2
Query: 1060 PPPPPPPPPXXXXG---XXXXXXXXXPPPPPPP 971
PPPPPPP PPPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 29.5 bits (63), Expect = 0.93
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = -2
Query: 1051 PPPPPPXXXXGXXXXXXXXXPPPPPPPXXXKKKKK 947
PP PPP PPPPPP + + K
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGK 324
Score = 22.2 bits (45), Expect(2) = 0.016
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 1060 PPPPPPPPP 1034
P PPP PPP
Sbjct: 251 PAPPPIPPP 259
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.9 bits (64), Expect = 0.70
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 1060 PPPPPPPPPXXXXGXXXXXXXXXPPPPPPP 971
PPP PP PPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 29.5 bits (63), Expect(2) = 0.026
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 1059 PPPPPPPPP 1033
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 1059 PPPPPPPPP 1033
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
Score = 23.8 bits (49), Expect(2) = 0.026
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 993 PPPPPPP 973
PPPPPPP
Sbjct: 238 PPPPPPP 244
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 30.3 bits (65), Expect = 0.53
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 1059 PPPPPPPPPXXXXGG 1015
PPPPPPPPP G
Sbjct: 945 PPPPPPPPPLVSAAG 959
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 1059 PPPPPPPPPXXXXGG 1015
PPPPPPPP GG
Sbjct: 946 PPPPPPPPLVSAAGG 960
Score = 23.8 bits (49), Expect(2) = 3.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 993 PPPPPPP 973
PPPPPPP
Sbjct: 945 PPPPPPP 951
Score = 23.8 bits (49), Expect(2) = 2.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 993 PPPPPPP 973
PPPPPPP
Sbjct: 946 PPPPPPP 952
Score = 23.8 bits (49), Expect(2) = 2.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 993 PPPPPPP 973
PPPPPPP
Sbjct: 947 PPPPPPP 953
Score = 23.8 bits (49), Expect(2) = 1.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 991 PPPPPPP 971
PPPPPPP
Sbjct: 947 PPPPPPP 953
Score = 23.4 bits (48), Expect(2) = 1.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 1060 PPPPPPPP 1037
P PPPPPP
Sbjct: 905 PTPPPPPP 912
Score = 22.6 bits (46), Expect(2) = 2.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 1059 PPPPPPPP 1036
PPPPPP P
Sbjct: 907 PPPPPPLP 914
Score = 22.6 bits (46), Expect(2) = 2.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 1056 PPPPPPPP 1033
PPPPPP P
Sbjct: 907 PPPPPPLP 914
Score = 21.8 bits (44), Expect(2) = 3.4
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 1059 PPPPPPPPP 1033
P PPPPPP
Sbjct: 942 PAFPPPPPP 950
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.93
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 1059 PPPPPPPPP 1033
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 23.4 bits (48), Expect(2) = 1.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 1060 PPPPPPPP 1037
P PPPPPP
Sbjct: 3 PAPPPPPP 10
Score = 23.4 bits (48), Expect(2) = 1.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 1057 PPPPPPPP 1034
PPPPPP P
Sbjct: 5 PPPPPPAP 12
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 956 FFXXXXGGGGGGGXXXXXXXPPXXXXGGGGGGGGG 1060
F GGG GG PP G GG GG G
Sbjct: 180 FHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFG 214
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 991 PPPPPPPXXXKKK 953
PPPPPPP +KK
Sbjct: 1096 PPPPPPPAEVEKK 1108
Score = 26.6 bits (56), Expect = 6.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1059 PPPPPPPP 1036
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 6.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1056 PPPPPPPP 1033
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 992 PPPPPPPXXXKKKK 951
PPPPPPP +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 6.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 1060 PPPPPPPP 1037
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 6.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1056 PPPPPPPP 1033
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -2
Query: 1060 PPPPPPPPPXXXXGXXXXXXXXXPPPPPPP 971
PPPPP P PPPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,733
Number of Sequences: 5004
Number of extensions: 24279
Number of successful extensions: 535
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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