Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_H10
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 71 1e-12
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 66 2e-11
01_06_0202 + 27483503-27483543,27484567-27485311 31 0.85
08_02_0665 + 19818500-19819013,19819169-19819260,19819435-198200... 31 1.5
05_05_0132 - 22611030-22611908,22612016-22612135,22612644-226128... 30 2.6
06_01_0711 + 5154232-5154942,5155597-5156010 29 6.0
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481... 28 7.9
10_01_0204 + 2199778-2200835,2201212-2201311 28 7.9
04_04_0864 - 28852252-28854582 28 7.9
03_05_0736 - 27254502-27255497 28 7.9
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/75 (44%), Positives = 51/75 (68%)
Frame = -3
Query: 586 FFKYLCXAAKVNHAVVTAREXVKCGKCVVIGLQSTGEARTLDQLERDDGDLTDFVSTAKG 407
FF+++C +AKV V A+E + KCVV+GLQSTGEART + + + ++ DFVS +
Sbjct: 502 FFRHMCMSAKVPAVVKLAKEALAENKCVVVGLQSTGEARTEEAITKYGVEMEDFVSGPRE 561
Query: 406 VLQTLVEKHFPAPDR 362
+L LVE+++P P +
Sbjct: 562 LLLKLVEENYPLPPK 576
>08_01_0774 +
7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/75 (42%), Positives = 49/75 (65%)
Frame = -3
Query: 586 FFKYLCXAAKVNHAVVTAREXVKCGKCVVIGLQSTGEARTLDQLERDDGDLTDFVSTAKG 407
FF+++C +AKV V +E + KCVVIGLQSTGEART + + + ++ DFVS +
Sbjct: 604 FFRHMCMSAKVPAVVRLVKEALAEEKCVVIGLQSTGEARTEEAISKYGVEMEDFVSGPRE 663
Query: 406 VLQTLVEKHFPAPDR 362
+L LV+ ++P P +
Sbjct: 664 LLLKLVDDNYPLPPK 678
>01_06_0202 + 27483503-27483543,27484567-27485311
Length = 261
Score = 31.5 bits (68), Expect = 0.85
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -2
Query: 482 WGGAHPRPAREGRRRPHGLRVHRQGGAAD 396
WGG RPA+ GRRR G R+ ++ G AD
Sbjct: 57 WGGDRQRPAK-GRRRAVGWRMGKRRGMAD 84
>08_02_0665 +
19818500-19819013,19819169-19819260,19819435-19820056,
19820575-19820775,19821327-19821395,19821428-19821522,
19821608-19822153
Length = 712
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 455 REGRRRPHGLRVHRQGGAADACGEALPGAG 366
R G RR HG+R +G D GEA+ G+G
Sbjct: 33 RRGERRWHGIRGAEKGVKEDGGGEAVEGSG 62
>05_05_0132 -
22611030-22611908,22612016-22612135,22612644-22612856,
22612968-22613288,22613421-22613504
Length = 538
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -2
Query: 491 AEHWGGAHPRPAREGRRRPHGLRVHRQGGAADACGEALP 375
A G P P REGRRRP H + A EA P
Sbjct: 382 AARGGERQPGPRREGRRRPPLAAAHDEPAVRGAAEEAEP 420
>06_01_0711 + 5154232-5154942,5155597-5156010
Length = 374
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = -2
Query: 461 PAREGRRRPHGLRVHRQG----GAADACGEALPGAG 366
PAR GRRRP V R G G AD+ G AL G
Sbjct: 318 PARGGRRRPGEEGVDRGGKDGAGGADSRGRALENGG 353
>12_01_0590 -
4813764-4814401,4814785-4814872,4815176-4815376,
4816803-4816830,4817136-4817339,4817352-4819136,
4820358-4821139
Length = 1241
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -3
Query: 517 CGKCVVIGLQSTGEARTLDQLERDDGDLTDFVSTAKGVLQTLVEKHFP 374
CG C+ +G+ + RD G + TAK L +L H P
Sbjct: 856 CGTCLPVGIDHLPACLREIHINRDYGADRRDIETAKSALSSLFATHHP 903
>10_01_0204 + 2199778-2200835,2201212-2201311
Length = 385
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -2
Query: 491 AEHWGGAHPR-PAREGRRRPHGL 426
AE WGG R GR RPHGL
Sbjct: 61 AERWGGGAERWGGSAGRNRPHGL 83
>04_04_0864 - 28852252-28854582
Length = 776
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 186 PRARLAAAFACWRDVNFLLDVLASSSR 266
PRAR+AA CW F D+LA+ R
Sbjct: 256 PRARVAAYKVCWAGGCFSSDILAAVDR 282
>03_05_0736 - 27254502-27255497
Length = 331
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -2
Query: 512 QVCRHRPAEHWGGAHPRPAREGRRRPHGLR--VHRQGGAAD 396
+V R R W GA R A E RR P R H GAAD
Sbjct: 270 EVLRWRRTGRWDGAVHRAAEEARRHPQRRRGARHCHLGAAD 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,021,075
Number of Sequences: 37544
Number of extensions: 213087
Number of successful extensions: 792
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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