Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_H06
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   0.93 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   5.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect(2) = 0.93
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 625 PPXGGGXXXXXXXPPPPPXXXGGG 554
           PP G         PPPPP    GG
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 21.8 bits (44), Expect(2) = 0.93
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 712 PPPPPPXFXXGG 677
           PPPPPP     G
Sbjct: 763 PPPPPPGVAGAG 774


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/54 (31%), Positives = 20/54 (37%)
 Frame = -2

Query: 712 PPPPPPXFXXGGXKKKKKKXXXXXXFXXSPPXGGGXXXXXXXPPPPPXXXGGGG 551
           PPPPPP       ++ + K          PP G G       PPPPP      G
Sbjct: 311 PPPPPPP-----SRRNRGK----------PPIGNGSSNSSLPPPPPPPRSNAAG 349


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.0 bits (47), Expect(2) = 5.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 712 PPPPPPXF 689
           PPPPPP F
Sbjct: 11  PPPPPPGF 18



 Score = 21.4 bits (43), Expect(2) = 5.3
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -2

Query: 625 PPXGGGXXXXXXXPPPPP 572
           PP   G       PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,785
Number of Sequences: 5004
Number of extensions: 29986
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)