Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_H01
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    28   1.8  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    27   2.3  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   3.1  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    26   5.4  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   7.2  
SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.5  

>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 196 SRGKAPVGGFQMAPGGERKKSQLSPDEETPDEELERRLKNLRGFN 62
           S GK  VGG    P   +  S L+ D+   D+ + ++LKN   FN
Sbjct: 15  SLGKHTVGGRVGKPTNAKTGSALTSDKSLFDKRIVKQLKNNELFN 59


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -1

Query: 265 GVWLYNRRDADDFACSTEFFSSESRGKAPVGGFQMAPGGERKKSQLSPDEETPDEELERR 86
           G+ +++R  AD  A +T+    ESR  +P    Q      R  S  S DE++ +E ++R 
Sbjct: 164 GMSIHSR--ADSRAETTQSDGFESRSGSPTHDIQSYLVNRRSSSSESSDEDSAEEGMKRL 221

Query: 85  LKNLRGFN 62
           +    G N
Sbjct: 222 VITNMGDN 229


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 458 LRIIQIVCGFLIFLLPVSIGYCNLSPDSVLFIL 556
           L I+  V GF + LLP S     +SPDS +  L
Sbjct: 284 LGIVLFVSGFTLLLLPFSHSSQVVSPDSTILTL 316


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 568 ERPEKDKENRVRRKIAVPDGDWEEK-DKEPADDLDNA 461
           +  E+D+E     +   P+   EEK DKE AD+L  A
Sbjct: 348 DEEEEDEEEEAESQSPEPETSEEEKEDKELADELSKA 384


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 24/99 (24%), Positives = 39/99 (39%)
 Frame = -1

Query: 373 RTDDRLHPGQKLDVDYTKPPRLYNSDFAVKDHRLEAGVWLYNRRDADDFACSTEFFSSES 194
           R  D  HP  + D   +K     N D   +   LE   ++YN ++ +D    ++  +   
Sbjct: 326 RRYDSYHPDSRSDSYRSKREHYDNRDTGPRSKHLEKSSYVYN-QNFEDRTHLSDHGAHFH 384

Query: 193 RGKAPVGGFQMAPGGERKKSQLSPDEETPDEELERRLKN 77
            G A    F M  G  RK+       E+ + EL  +  N
Sbjct: 385 LGNA--NDFNM-QGSSRKRKASDRQRESRENELPTKKLN 420


>SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 123

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 502 EEKDKEPADDLDNAKQSKPWYPRFEECLKTDAAWRDADAAHEIRTD 365
           E KDK P +  +NAKQS       ++   TD   +  DA  +I+ +
Sbjct: 54  ENKDKSPQEMAENAKQSVK--QTAKDAKDTDYQQKAKDAGKKIKEE 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,132
Number of Sequences: 5004
Number of extensions: 54799
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)