Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_G17
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798 32 0.47
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 31 1.1
01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394 30 1.9
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 29 4.4
10_06_0124 + 11013346-11013474,11013879-11013939,11014751-110148... 29 5.8
03_02_0465 - 8688454-8689899 29 5.8
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 29 5.8
01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205... 29 5.8
06_01_1012 + 7926408-7927232 28 7.6
01_06_0475 + 29610268-29610711 28 7.6
>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
Length = 333
Score = 32.3 bits (70), Expect = 0.47
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = -1
Query: 553 LTGHDDFRCVNFSSPRK-LACFLVCLL--AGVRSHRTCSVIGTTSIKRHDTRTLSSWPPV 383
+ G D + +FSS + C ++C G + ++ S+ TT+ HDT T +S PP+
Sbjct: 142 MEGVHDQQASSFSSKEDWVLCRVICKRKSGGGATSKSRSLTTTTTTIVHDTSTPTSSPPL 201
Query: 382 TTFPILRTEWKAVDVAQNTSS 320
P++ T + + NTSS
Sbjct: 202 P--PLMDTTLAQLQASMNTSS 220
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 31.1 bits (67), Expect = 1.1
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = -2
Query: 306 STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARL 127
S NG R P SS +L +G L+L S F P SG+R RSGG
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGGMSVSLAS 256
Query: 126 LLGFVLATS-SGLSPVSSPTKVRV 58
G V+ +GL +SP ++ V
Sbjct: 257 PDGRVVGGGVAGLLVAASPVQIVV 280
>01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394
Length = 629
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +2
Query: 563 PVRSCLAMRRCSGSAGGCRFSGEVRACACLTSVRGWLP 676
PV C A C+ S G CR+ A ACL S G P
Sbjct: 210 PVGDCNA---CTASGGRCRYDASTSAFACLCSDGGMRP 244
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -2
Query: 246 LATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSS 76
L TKG +T+ H P+ FSP S G E+ L + S GL P+S+
Sbjct: 203 LETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPIST 259
>10_06_0124 +
11013346-11013474,11013879-11013939,11014751-11014838,
11017619-11017806,11017849-11018112,11018188-11018262,
11018263-11019698
Length = 746
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 574 VSGDAAVFGFRWRMQVFR*SACLCVLDKCSRLASSV*E*HRVXXVXPVKLXFAWWLVXLL 753
V G G RWR+Q +C L L++ + + HR+ K+ + WW + LL
Sbjct: 31 VEGRGIGEGKRWRLQ-----SCKLKLQSAFPLSAKISDGHRMRAYTKRKVVWPWWALALL 85
>03_02_0465 - 8688454-8689899
Length = 481
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -3
Query: 662 EHLSSTHKHALHRKTCIRQRNPNTAASPDTNAPDVLSY---RSRRLQMCQFFFPTE 504
EHL++ H LHR T +RQ P A + + +P + Y + R + Q+ PT+
Sbjct: 142 EHLTTFRTH-LHRITSLRQLPPGLAVAGSSLSPGLHVYDLLKGRHVASVQWSDPTD 196
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 683 HTEEANREHLSSTHKHALHRKTCIRQRNPNTAASPDTNAPDVLSYRSRR 537
H E +R H S HKH L R + + P D+++ D +RS +
Sbjct: 743 HRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHRHRDSSSEDEHEHRSSK 789
>01_01_0250 +
2052599-2053358,2053581-2053604,2054813-2054848,
2055047-2056284
Length = 685
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Frame = +2
Query: 404 GSRVVPLYRSGTNNTTRSMTSDSSKQANKKASKFPWGRKIDTSEVV---VTCKIRRPVRS 574
G++ V + NNT + + A P D +++ + R P
Sbjct: 160 GAKAVVRLDTSYNNTAARVVAGGCDYAAVPVVGVPGASPTDYPQLLRGGYMLEWRAPAGD 219
Query: 575 CLAMRRCSGSAGGCRFSGEVRACACLTS-------VRGWLPQCESN 691
C+A C+ S G C + + A AC+ S + GWL + N
Sbjct: 220 CMA---CNASGGQCGYDADTEAFACICSDGSSRPGICGWLELTKGN 262
>06_01_1012 + 7926408-7927232
Length = 274
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -3
Query: 725 YNFTGSTXXTRCYSHTEEANREHLSSTHKHALHRKTCIRQRNPNTAASP 579
+N + + +++A EH H H H KT +N N AA+P
Sbjct: 98 HNAAAAAKKEAAEAESDDAKSEHRRRHHHH--HHKTTSAAKNANPAAAP 144
>01_06_0475 + 29610268-29610711
Length = 147
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 270 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 181
SP SS+P S+++ TL HSP S SPD
Sbjct: 54 SPMSSSPP---SRSSTRATLTHSPSSASPD 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,113,349
Number of Sequences: 37544
Number of extensions: 453864
Number of successful extensions: 1378
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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