Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_G09
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...   292   2e-79
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711...    65   5e-11
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933...    44   1e-04
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800...    44   1e-04
02_01_0487 + 3503003-3503037,3505802-3505833,3506012-3506127,350...    30   1.9  
04_01_0376 - 4929447-4929731                                           29   5.8  
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    28   7.6  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score =  292 bits (716), Expect = 2e-79
 Identities = 139/206 (67%), Positives = 158/206 (76%)
 Frame = -3

Query: 746 NTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTXHPVFATRYGKIAVNICFGRHH 567
           NTAVVI + GN+IG HRKNHIPRVGDFNES YYMEGNT HPVF T YGKI VNIC+GRHH
Sbjct: 206 NTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHH 265

Query: 566 VLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPN 387
            LNW+ FG NGAEIVFNPSAT+ GE  SE MW +EARNAAI N YF  +INRVG E FPN
Sbjct: 266 PLNWLAFGLNGAEIVFNPSATV-GE-LSEPMWPIEARNAAIANSYFVGSINRVGTEVFPN 323

Query: 386 EFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCY 207
            FTS DGKP H D G FYGSS+F  PD    P LSR RDGL+I+ +DLNL RQI+D+  +
Sbjct: 324 PFTSGDGKPQHADFGHFYGSSHFSAPDASCTPSLSRYRDGLMISDMDLNLCRQIKDKWGF 383

Query: 206 YMTQRLDMYVNSLSKVLELDYKPQVV 129
            MT R D Y + LS+ L+ D+KPQV+
Sbjct: 384 RMTARYDTYASLLSEYLKPDFKPQVI 409


>02_04_0096 +
           19669428-19669525,19670770-19670818,19671041-19671132,
           19671235-19671386,19671478-19671524,19671617-19671650,
           19671769-19671935,19672070-19672166,19672239-19672408
          Length = 301

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 6/210 (2%)
 Frame = -3

Query: 791 VLXIRKGREAFGHTLNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTXHPVFAT 612
           V+ +    EA     N+  +I   G  +G +RK+HIP    + E  Y+  G+T    F T
Sbjct: 91  VIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKAFKT 150

Query: 611 RYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEG-----GSEYMWNVEARNAA 447
           +Y  I V IC+ +            GAEI+F P+A I  E       S   W    +  A
Sbjct: 151 KYATIGVGICWDQWFPECARAMVLQGAEILFYPTA-IGSEPQDNNLDSREHWKRVMQGHA 209

Query: 446 ITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGL-FYGSSYFCGPDGVRCPGLSRTRD 270
             N     A NR+G E    E         H +  + F+G+S+  GP G      +   +
Sbjct: 210 GANLVPLVASNRIGRETVETE---------HGESTITFFGNSFIAGPTGEIVKLANDKDE 260

Query: 269 GLLIAAVDLNLNRQIRDRRCYYMTQRLDMY 180
            +L+A  DL+  +  R     +  +R D+Y
Sbjct: 261 DVLVAEFDLDEIKSTRHGWGIFRDRRPDLY 290


>12_02_0453 +
           19192060-19192301,19192477-19192559,19193246-19193328,
           19193616-19193668,19194041-19194169,19194585-19194643,
           19195317-19195429,19195571-19195663,19195810-19195912,
           19196233-19196315,19196407-19196448
          Length = 360

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
 Frame = -3

Query: 800 WXSVLXIRKGREAFGHTLNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGN 636
           W S+   ++      H  NT V+I D+G +   +RK H     +P    + ES +   G+
Sbjct: 159 WLSLGGFQEKGPDDSHQYNTHVLIDDSGEIRSSYRKIHLFDVDVPGNMVYKESRFTTAGD 218

Query: 635 TXHPVFATRYGKIAVNICFG-RHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEA 459
           T   V  + +G++ + +C+  R   L   +  ++ A+++  PSA     G  E  W +  
Sbjct: 219 TVVAV-DSPFGRLGLTVCYDLRFPELYQCLRFKHQAQVLLVPSAFTKVTG--EAHWEILL 275

Query: 458 RNAAI-TNCYFTAA 420
           R  AI T CY  AA
Sbjct: 276 RARAIETQCYVIAA 289


>02_05_0058 +
           25478274-25478421,25478963-25479142,25479714-25480007,
           25480261-25480564,25480672-25480751,25480765-25480934
          Length = 391

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 7/178 (3%)
 Frame = -3

Query: 767 EAFGHTL-NTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTXHPVFATRYGKIAV 591
           E  G+TL NT +     G  +GKHRK  +   G       + +G+T  PV+ T  GKI  
Sbjct: 133 ERVGYTLYNTVLFFDPLGKYLGKHRK--VMPTGLERVFWGFGDGSTI-PVYDTPIGKIGA 189

Query: 590 NICF-GRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAIN 414
            IC+  R  +L   M+ + G +I   P+A  +        W     + A+    F  + N
Sbjct: 190 VICWENRMPLLRTAMYAK-GVQIYCAPTADFSPS------WQASMTHIAVEGGCFVLSAN 242

Query: 413 ----RVGYEEFPN-EFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIA 255
               R  Y   P   F   D +P+ + + ++ G S    P G    G +   +GLL A
Sbjct: 243 QFCRRKNYPPAPEYTFGGLDEEPSPESV-IWPGGSSIVSPSGTVLAGPNYEGEGLLTA 299


>02_01_0487 +
           3503003-3503037,3505802-3505833,3506012-3506127,
           3506227-3506437,3506555-3506792,3507075-3507252,
           3507962-3508079,3508167-3508373,3509134-3509234
          Length = 411

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -3

Query: 521 FNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLG 342
           F+PS  I GEGG   ++  + RN  +      +  +R G +EF NE   A    +H++L 
Sbjct: 45  FSPSNKI-GEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNEL-MAISNVSHENLV 102

Query: 341 LFYG 330
             YG
Sbjct: 103 KLYG 106


>04_01_0376 - 4929447-4929731
          Length = 94

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 596 RSCRIWSRIQDGRCYLPCSSW 658
           RSC  W  +Q GRC   CS+W
Sbjct: 63  RSCAAW--LQQGRCSAGCSAW 81


>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 264 QAVSGAGQTGAPNAVGAAEVARSVEQAQVFVCRFPVSRSELVRELLVADSVDGRCEVAV 440
           +  SG      P+A+ A E   + E  ++ V R P     LVR + + +S +   E AV
Sbjct: 342 KCASGGCAGAVPSALAAVEALAASEAGRMAVARAPGGTRALVRHVFMMNSSNDGSEHAV 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,114,137
Number of Sequences: 37544
Number of extensions: 443907
Number of successful extensions: 1350
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)