Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_G04
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 34 0.020
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 29 0.74
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 29 0.98
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 28 1.7
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 28 1.7
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.3
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.9
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 26 5.2
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 5.2
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 26 6.9
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 9.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 9.1
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 34.3 bits (75), Expect = 0.020
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 404 AWYCKLCDQFIGDLHCASAHLKSIVHSKNYANFVEQNPHWETDWMSDRQK 255
A+YC++C +F G + AH KS H+K +P T +++QK
Sbjct: 242 AFYCEVCQKFFGKITVFEAHKKSKAHNKAVKRMQSSSPS-TTSNTNEKQK 290
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 29.1 bits (62), Expect = 0.74
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 374 IGDLHCASAHLKSIVHSKNYANFV 303
I LHCAS LKS +H K + N V
Sbjct: 1060 IRKLHCASLELKSSLHFKYFLNLV 1083
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 28.7 bits (61), Expect = 0.98
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 558 HXHSPAHHKMASAHMEAPWHGVSAHEGFPPNPAAPTKRTP 439
H SP+ A+ A VS+ PP P+APT+ TP
Sbjct: 328 HSKSPSPAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP 367
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 27.9 bits (59), Expect = 1.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 642 FNYVYYDPEMHWCR 601
FNY YYD H+CR
Sbjct: 63 FNYEYYDERFHFCR 76
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -1
Query: 537 HKMASAHMEAPWHGVSAHEGFPPNPAAPTKRTPIQGTTILRALHGLVLQAVRSVHRRPAL 358
H+ S ++AP V+ +E +P + PT +P LR+ ++ +S P++
Sbjct: 206 HEAPSTAVKAPTATVAENEPYPKPQSVPTTTSPNNENNALRSTANVINNTRQSTATSPSM 265
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/87 (22%), Positives = 38/87 (43%)
Frame = -1
Query: 576 AKDYLNHXHSPAHHKMASAHMEAPWHGVSAHEGFPPNPAAPTKRTPIQGTTILRALHGLV 397
+KDYL H P H ++ + + G ++ G N +A + + ++ IL +
Sbjct: 274 SKDYLKSSHPPVHKTLSQSVLVLSKDGNASSSGGTENQSANSSSSLMEKDAILSSSSWSQ 333
Query: 396 LQAVRSVHRRPALRVCPSQIHCALQEL 316
L +R + L+ P + +LQ L
Sbjct: 334 LLYLRCSSCK--LKSIPKNVFLSLQSL 358
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -3
Query: 439 YSRDYNSSCPPRPGTASCAISS*ETCTARLPISNPLCTPRTMLTLSNKIPTGKRT 275
Y+ ++SS PP+PG +S + T+ P+S + T+ S+ PT K++
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTPVSLSELSEITLFP-SSVSPTWKKS 1666
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -3
Query: 439 YSRDYNSSCPPRPGTASCAISS*ETCTARLPISNPLCTPRTMLTLSNKIPTGKRT 275
Y+ ++SS PP+PG +S + T+ P+S + T+ S+ PT K++
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTPVSLSELSEITLFP-SSVSPTWKKS 1666
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 409 PRPGTASCAISS*ETCTARLPI-SNPLCTPRTMLTLSNKIPTGKRTGCQT 263
P T+S +I T T+ S+PL T T T S IPTG + T
Sbjct: 196 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLST 245
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 5.2
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +3
Query: 294 ILFDKVSIVLGVHNGFEMGRRAVQVSYE 377
+ + + I+L + NGF MG+ Q++++
Sbjct: 503 LTYPLIEIILPIKNGFLMGKETFQIAFK 530
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -2
Query: 419 FVPSTAWYCKLCDQFIGDLHCASAHLKSIVHSKNYANFVEQNPHW 285
FVP+ +CKLC ++ +L S + Y + ++P W
Sbjct: 700 FVPAVG-HCKLCGKYSNELRAHYQDCVSSTIDRQYQSKKSESPVW 743
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 6.9
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = -2
Query: 353 SAHLKSIVHSKNYANFVEQNPHWETDWMSDRQKAFET-------TRGKLKAELTDKCVYT 195
S ++ SKNY +FV + TD MS FET + ++K +L V+T
Sbjct: 410 SVEAYDMIQSKNYESFVWKYVLHLTDEMSTEDALFETIPLSNLLAQKRMKDKLKGSDVFT 469
Query: 194 AQTIT 180
IT
Sbjct: 470 TLKIT 474
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Frame = -3
Query: 769 INNVVDMLNGIIGEEANVN-------TIEMKESPERTSQK 671
IN V ++LN +I E N N T+E +ES ++ Q+
Sbjct: 864 INEVQELLNEVISRERNTNNIYQRSLTVEPRESEDQALQR 903
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 645 KFNYVYYDPEMHWCRVCNDF 586
K N ++ E+H C VCN F
Sbjct: 498 KTNSIFRTYEVHGCEVCNSF 517
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,872
Number of Sequences: 5004
Number of extensions: 49682
Number of successful extensions: 177
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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