Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_G04
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 31 0.77
12_01_0366 + 2779754-2779882,2780007-2780047,2780163-2780212,278... 30 2.3
03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956 30 2.3
07_01_1085 + 9890369-9892114,9892213-9892731 29 4.1
07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371 29 4.1
04_04_0415 + 25038826-25038835,25039333-25039964,25040484-250405... 29 4.1
02_05_0478 - 29343548-29343682,29343831-29343833,29344261-293444... 29 5.4
05_01_0470 - 3747783-3748097,3749433-3750305 28 7.2
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 28 7.2
01_01_0403 - 3051317-3052120 28 7.2
10_02_0185 - 6386761-6387122,6387589-6387826,6388215-6389696 28 9.5
08_01_0812 + 7886057-7886872,7887115-7887702 28 9.5
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 28 9.5
01_06_0248 + 27862048-27864310,27864331-27864776 28 9.5
>12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 31.5 bits (68), Expect = 0.77
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 687 NGPPKKKSRSPSGAKFNYVYYDPEMHWCRVCNDFPPTAKDYLNHXHSPAHHKMA 526
+G PK+ + SG D ++ WCR+CN T ++ H + HH+ A
Sbjct: 1083 HGFPKESAHFGSGGHLR----DGDVSWCRICNISCGTVENLNIHVETREHHQHA 1132
>12_01_0366 +
2779754-2779882,2780007-2780047,2780163-2780212,
2780824-2780968,2781298-2781354,2781448-2781571,
2781798-2782259,2782493-2782564
Length = 359
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -1
Query: 549 SPAHHKMASAHMEAPWHGVSAHEGFPPNPAAPTKRTPI 436
SP H A AH A HG + PP P P TP+
Sbjct: 279 SPFHPTSADAHRPAYGHGTPLLQPLPP-PTPPASLTPV 315
>03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956
Length = 397
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = -1
Query: 627 YDPEMHWCRVCNDFPPTAKDYLNHXHSPAHHKMASAHMEAPWHGVSAHEGFPPNPAAPTK 448
+ PE R+ +PP Y ++ H HH+ AH A + H PP P P
Sbjct: 309 FPPEEMMKRMHLYWPPYGHGYTSYYHHHHHHQGGQAHPCA-----NLHSWVPPPPPPPPP 363
Query: 447 RTPI 436
P+
Sbjct: 364 PPPV 367
>07_01_1085 + 9890369-9892114,9892213-9892731
Length = 754
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 287 WETDWMSDRQKAFETTRGKLKAELTDKCVYTAQTITFSKDGFHS 156
W T SD+ + F T + K+K L K + +QT F H+
Sbjct: 48 WATALSSDQFRGFHTAKNKIK-PLPPKLFFVSQTAGFGSTSVHT 90
>07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371
Length = 722
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 287 WETDWMSDRQKAFETTRGKLKAELTDKCVYTAQTITFSKDGFHS 156
W T SD+ + F T + K+K L K + +QT F H+
Sbjct: 48 WATALSSDQFRGFHTAKNKIK-PLPPKLFFVSQTAGFGSTSVHA 90
>04_04_0415 +
25038826-25038835,25039333-25039964,25040484-25040561,
25040588-25040833,25041598-25041684,25041860-25042024
Length = 405
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1
Query: 303 RTKSPLGNGLDVRPTESLRDDPRQAEGGAHRQVRVHGADHHLQQGRLPL 157
R+K +G G DVRP L +GG R++ +GA +L + L L
Sbjct: 115 RSKKIVGGGTDVRPVYGLEFVHGGYDGGRSRELAGNGASAYLCEDVLGL 163
>02_05_0478 -
29343548-29343682,29343831-29343833,29344261-29344401,
29344496-29344638,29345004-29345161,29345261-29345342,
29345506-29345603,29345726-29345880,29346200-29346283,
29346541-29346681
Length = 379
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 684 GPPKKKSRSPSGAKFNYVYYDPEMHWCR 601
GPP + +++ KF YVY DPE R
Sbjct: 71 GPPPEVAKALGNLKFPYVYPDPESRQLR 98
>05_01_0470 - 3747783-3748097,3749433-3750305
Length = 395
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 528 ASAHMEAPWHGVSAHEGFPPNPAAPT 451
AS+H+EA H A EG P P PT
Sbjct: 126 ASSHLEAHGHHQHAEEGESPPPPPPT 151
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 660 SPSGAKFNYVYYDPEMHWCRVCNDFPPTAKDYLNHXHSPAHHKMASAHMEAPWHGV 493
SPS + D E H C++CN K L H + H + + PW GV
Sbjct: 624 SPSESDHGSTESDEEFHMCQICN--TEEEKTLLLHCSGCSRH-VHPGCLTPPWTGV 676
>01_01_0403 - 3051317-3052120
Length = 267
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 622 PRDALVPRVQRLPAHRQGLPQPXALSRAPQDGVGP 518
PR L P + P R P P +++ P+D GP
Sbjct: 8 PRLTLTPTPRANPGRRSARPTPASITCGPRDNRGP 42
>10_02_0185 - 6386761-6387122,6387589-6387826,6388215-6389696
Length = 693
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 507 PWHGVSAHEGFPPNPAAPTKRTPIQGTTILRALHGLVLQAVRSVHRRPALR 355
PW + + PP + P +++P T+ A+HG L+A+ + R R
Sbjct: 247 PWRLMDSR--LPPPRSVPYRQSPALKATLQDAIHGFYLKALARLPARELRR 295
>08_01_0812 + 7886057-7886872,7887115-7887702
Length = 467
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 549 SPAHHKMASAHMEAPWHGVSAHEGFPPNPAA 457
SPA ++S+ M +PW G S P PAA
Sbjct: 50 SPAPSTLSSSCMSSPWGGGSGRWSASPAPAA 80
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = -1
Query: 639 NYVYYDPEMHWCRVCNDFPPTAKDYLNHXHSPAHHKMASAHMEAPWHGVSAHEGFPPN 466
++++ P H R + PP + H H P HH H P H H PP+
Sbjct: 21 SHIFAPPPPH-LRHPHHHPPHHHPHPPHHHPP-HHPHPPHHPHPPHHPHPPHHPHPPH 76
>01_06_0248 + 27862048-27864310,27864331-27864776
Length = 902
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 214 VSSAFSLPRVVSKAFCRSDIQSVSQW 291
+ F LP++VS AF S + ++S W
Sbjct: 784 ILDGFLLPQIVSNAFSASRVNAISPW 809
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,860,829
Number of Sequences: 37544
Number of extensions: 421515
Number of successful extensions: 1543
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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