Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_G03
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   4.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   4.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.8  

>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 405 AILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRR--MPSSNAGXFPKXLVCL 566
           A+  + S  N I F+V  S+V++T L   ++  R P R  MPS     F + L CL
Sbjct: 321 AVPLIGSYFNCIMFMVA-SSVVLTVLV-LNFHHRTPDRYVMPSWIKMLFLQWLPCL 374


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/41 (21%), Positives = 20/41 (48%)
 Frame = -3

Query: 722 QSEIGPENXWEKXIPVDSVFAQDEMIDCIGVTQGPKDTKVS 600
           QSE+   +     +P++ +   ++ ++C    QG  +  VS
Sbjct: 192 QSEVESTSSLHSDMPIERILEAEKRVECKMEQQGNYENAVS 232


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/41 (21%), Positives = 20/41 (48%)
 Frame = -3

Query: 722 QSEIGPENXWEKXIPVDSVFAQDEMIDCIGVTQGPKDTKVS 600
           QSE+   +     +P++ +   ++ ++C    QG  +  VS
Sbjct: 192 QSEVESTSSLHSDMPIERILEAEKRVECKMEQQGNYENAVS 232


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 735 PPVXLDFHNVSXXFVXGLT 791
           PP  LD+H+ S  F   LT
Sbjct: 322 PPPNLDYHDYSRQFPRDLT 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,014
Number of Sequences: 438
Number of extensions: 4537
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)