Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_G01
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    30   0.48 
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   2.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.9  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    26   5.9  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 25/92 (27%), Positives = 44/92 (47%)
 Frame = -2

Query: 348 DIEKAFDRVWHAGLXYKLLQNTDLQHAYVRLLGSYVEGRSFLVAVEGAKSSVRPVTAGVP 169
           DI+  FD + H  L   LL +      +++L+      R  L A    ++  +    G P
Sbjct: 370 DIKACFDSIPHDKLI-ALLSSKIKDQRFIQLI------RKALNAGYLTENRYKYDIVGTP 422

Query: 168 QGSVLAPVLYALYTNDIPTLEGNLQAWEADVK 73
           QGS+++P+L  +Y + +     NL++ E D K
Sbjct: 423 QGSIVSPILANIYLHQLDEFIENLKS-EFDYK 453


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -1

Query: 172 SPGKRPGTSPLRSLHQRHSHARGQPPSVGSRREVGAV 62
           SP   P   P  S+HQ  S    QPPS  S    G V
Sbjct: 34  SPRLTPNLPPPFSVHQLQSFVPPQPPSSSSPSTTGTV 70


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 726 GGIXXXPGGXGPFXXXXGEGPXXGG 800
           GG    PGG G F    GEG   GG
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGG 222


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 155 RTLPWGTPAVTGRTDDLAPSTATRKDLPSTYDPSS 259
           RTLP    AVT  T +++ S++ R DLP+ +  S+
Sbjct: 140 RTLP---SAVTATTSNISTSSSHRSDLPNEWTNST 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,532
Number of Sequences: 5004
Number of extensions: 41873
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)