Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_F23
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045638-7|AAQ91907.1|  242|Caenorhabditis elegans Hypothetical ...    31   1.0  
AF045638-6|AAO44909.1|  212|Caenorhabditis elegans Hypothetical ...    31   1.0  
AF045638-5|AAC02562.3|  544|Caenorhabditis elegans Hypothetical ...    31   1.0  
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    29   5.6  
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    29   5.6  

>AF045638-7|AAQ91907.1|  242|Caenorhabditis elegans Hypothetical
           protein C35B1.2c protein.
          Length = 242

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +3

Query: 564 AVSVKDIWN-IATRASTSPRSWLCTALDRSVTS 659
           AVS+KD+ N I+T AS  P+S +CT++ +  T+
Sbjct: 146 AVSLKDVVNFISTDASEIPKSLICTSIPQEFTN 178


>AF045638-6|AAO44909.1|  212|Caenorhabditis elegans Hypothetical
           protein C35B1.2b protein.
          Length = 212

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +3

Query: 564 AVSVKDIWN-IATRASTSPRSWLCTALDRSVTS 659
           AVS+KD+ N I+T AS  P+S +CT++ +  T+
Sbjct: 146 AVSLKDVVNFISTDASEIPKSLICTSIPQEFTN 178


>AF045638-5|AAC02562.3|  544|Caenorhabditis elegans Hypothetical
           protein C35B1.2a protein.
          Length = 544

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +3

Query: 564 AVSVKDIWN-IATRASTSPRSWLCTALDRSVTS 659
           AVS+KD+ N I+T AS  P+S +CT++ +  T+
Sbjct: 146 AVSLKDVVNFISTDASEIPKSLICTSIPQEFTN 178


>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +1

Query: 619 GPGSAPHWTDPSHPRLLTRTYCIFFVNHESSLXQHXHVXHXCXVITFEXXRDS 777
           G     HWT+ +HPR    T+C +     + +  H +    C V      RD+
Sbjct: 47  GTSGHHHWTETNHPR---PTFCNYCREKLNGVPWHGYTCDICKVKAHRKCRDN 96


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +1

Query: 619 GPGSAPHWTDPSHPRLLTRTYCIFFVNHESSLXQHXHVXHXCXVITFEXXRDS 777
           G     HWT+ +HPR    T+C +     + +  H +    C V      RD+
Sbjct: 47  GTSGHHHWTETNHPR---PTFCNYCREKLNGVPWHGYTCDICKVKAHRKCRDN 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,960,478
Number of Sequences: 27780
Number of extensions: 142449
Number of successful extensions: 435
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)