Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_F18
         (1008 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    33   0.36 
04_04_1125 + 31085106-31085714                                         29   5.9  
08_01_0059 - 394001-394708                                             29   7.8  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 33.1 bits (72), Expect = 0.36
 Identities = 25/112 (22%), Positives = 25/112 (22%), Gaps = 3/112 (2%)
 Frame = +2

Query: 650 PPPXXXXXXHTXXXPSXPPXXXTPXXXXXXPPPXXSXXXXXLXXXXXX---PTXXPQXXX 820
           PPP      H       PP    P       PP                  P   PQ   
Sbjct: 31  PPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYY 90

Query: 821 SPXXXXXXXXXXXXXPXXPPPPXXLXXPXXXXPXPXXPXXRXXRLLXXXXPP 976
            P             P  PPPP     P    P P  P     R      PP
Sbjct: 91  QPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAPPP 142


>04_04_1125 + 31085106-31085714
          Length = 202

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 865 PXXXXPPXXTPXTXXXXPXPXXAPPPXXAPP 957
           P    PP  TP T    P P   PP    PP
Sbjct: 43  PCQPPPPTPTPATPTTPPTPWTPPPATPTPP 73


>08_01_0059 - 394001-394708
          Length = 235

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +1

Query: 880 PPXXTPXTXXXXPXPXXAPPPXXAPPXXXXXPXXPR 987
           PP   P      P P    PP  +PP     P  PR
Sbjct: 6   PPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPR 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,974,512
Number of Sequences: 37544
Number of extensions: 327227
Number of successful extensions: 4222
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3772
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2963829220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)