Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_F13
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   127   2e-30
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   123   3e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    34   0.026
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    30   0.43 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.7  
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    27   4.0  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.3  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    26   7.0  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  127 bits (307), Expect = 2e-30
 Identities = 63/107 (58%), Positives = 71/107 (66%)
 Frame = -1

Query: 698 GRFAPGVFINQIQXAFX*TSXFDCIDPAQDHQPITEASYVNIPVIALCNTDSPLRFVXIA 519
           GRF PG F N I   +         DP  D Q I EAS+VNIPVIALC+TDS L  V IA
Sbjct: 103 GRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIA 162

Query: 518 IPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 378
           IP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYRDP
Sbjct: 163 IPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  123 bits (297), Expect = 3e-29
 Identities = 61/107 (57%), Positives = 70/107 (65%)
 Frame = -1

Query: 698 GRFAPGVFINQIQXAFX*TSXFDCIDPAQDHQPITEASYVNIPVIALCNTDSPLRFVXIA 519
           GRF PG F N I   +         DP  D Q I EAS+VNIPVIALC+TDS L  V +A
Sbjct: 104 GRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVA 163

Query: 518 IPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 378
           IP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYRDP
Sbjct: 164 IPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 33.9 bits (74), Expect = 0.026
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -1

Query: 626 IDPAQDHQPITEASYVNIPVIALCNTDSPLRFVXIAIPCNTKSSHSIGLMWWLLAR 459
           ++P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 186 LNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 373 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 492
           L  S+  N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 99  LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 442 VVCFPVTSAGMLWLICSSTVTPEESEKD 359
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 746 SVXXXICRAHRCYAYWGRFAPG 681
           S+   +C    CY YWG F  G
Sbjct: 145 SLGAFVCGVFCCYVYWGLFRTG 166


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 488 IGLMWWLLAREVLRLRGVLPRDQRWD 411
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 541 GESVLHKAITGMLTYEASVMG*WSCAGSIQSKXXVHXNAXWIWLI 675
           G +++HK    +      V G WS   +++     + +A WIWL+
Sbjct: 104 GYTLVHKKARDIQA-RYGVYGTWSIIPALRETLAEYPDAGWIWLL 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,156
Number of Sequences: 5004
Number of extensions: 48004
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)