Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_F13
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   130   9e-31
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   130   9e-31
09_04_0225 - 15855544-15855727,15855796-15856406                       30   1.8  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.2  
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794...    29   3.2  
07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926     29   5.5  
06_03_0543 + 21967787-21970261                                         29   5.5  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.3  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  130 bits (315), Expect = 9e-31
 Identities = 59/111 (53%), Positives = 74/111 (66%)
 Frame = -1

Query: 710 YAYWGRFAPGVFINQIQXAFX*TSXFDCIDPAQDHQPITEASYVNIPVIALCNTDSPLRF 531
           +A  GR  PG F NQ+Q +F         DP  DHQPI E++  NIP IA C+TDSP+R+
Sbjct: 101 HAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY 160

Query: 530 VXIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 378
           V I IP N K   SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDP
Sbjct: 161 VDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  130 bits (315), Expect = 9e-31
 Identities = 59/111 (53%), Positives = 75/111 (67%)
 Frame = -1

Query: 710 YAYWGRFAPGVFINQIQXAFX*TSXFDCIDPAQDHQPITEASYVNIPVIALCNTDSPLRF 531
           +A  GR  PG F NQ+Q +F         DP  DHQPI E++  NIP IA C+TDSP+R+
Sbjct: 101 HAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY 160

Query: 530 VXIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 378
           V I IP N K  +SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDP
Sbjct: 161 VDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211


>09_04_0225 - 15855544-15855727,15855796-15856406
          Length = 264

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -1

Query: 251 GYRPACCTRCSSC-FWSTPC--SRRMVCPGTR 165
           G  P+  TRC SC  W+T C  + R  CP TR
Sbjct: 171 GATPSATTRCRSCTAWATSCPGTSRAGCPPTR 202


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 230 TRCSSCFWSTPCSRRMVCPGTR*VEHN 150
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 230 TRCSSCFWSTPCSRRMVCPGTR 165
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>01_01_1003 -
           7939376-7939414,7939464-7939568,7939757-7939872,
           7941494-7942760
          Length = 508

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 229 VQQAGRYPQPMKPLAPVFHSSLHGQ 303
           V+++ RYP P +PLAP+   S HG+
Sbjct: 223 VEKSVRYPLPPRPLAPICVFSHHGR 247


>07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926
          Length = 306

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 187 LLEQGVLQKQELQRVQQAGRYPQPMKPLAP 276
           LLE+  + KQ+ Q+ QQAG  P   +P+AP
Sbjct: 178 LLEKLKIAKQQQQQQQQAGPEPPRGEPIAP 207


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 482 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 393
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 230 TRCSSCFWSTPCSRRMVCPGTR*VEHN 150
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,033,469
Number of Sequences: 37544
Number of extensions: 335614
Number of successful extensions: 802
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)